miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 81478 0.71 0.725981
Target:  5'- cGCgcgGCACGaugacgaggaggagGCGCCGCCGGCggcgcGCGUg -3'
miRNA:   3'- -UGaa-CGUGU--------------UGCGGUGGCCGa----UGUAg -5'
6728 5' -53.5 NC_001875.2 + 118095 0.71 0.729055
Target:  5'- cACUuugUGCGCGACGCCGCgcgagUGGUggagaGCAUCa -3'
miRNA:   3'- -UGA---ACGUGUUGCGGUG-----GCCGa----UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 116577 0.71 0.739245
Target:  5'- ---aGCACcACGCCGCCGGUggUGCGc- -3'
miRNA:   3'- ugaaCGUGuUGCGGUGGCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 91605 0.71 0.739245
Target:  5'- gACaUGCGCGcccacGCGCCGCCGcucaGCUACAg- -3'
miRNA:   3'- -UGaACGUGU-----UGCGGUGGC----CGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 107720 0.71 0.749332
Target:  5'- aGCUUGUGCGACGgCGCCGcGCU-UGUCc -3'
miRNA:   3'- -UGAACGUGUUGCgGUGGC-CGAuGUAG- -5'
6728 5' -53.5 NC_001875.2 + 67818 0.7 0.769164
Target:  5'- cUUUGCGC-ACGuguccaccuCCACCGGCUACGa- -3'
miRNA:   3'- uGAACGUGuUGC---------GGUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 95662 0.7 0.788468
Target:  5'- gGCUguUGCGCGuguACGCgGCCGGCgGCGa- -3'
miRNA:   3'- -UGA--ACGUGU---UGCGgUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 72518 0.7 0.788468
Target:  5'- -aUUGCGCAGCGCgGCCGagacaaGC-GCGUCg -3'
miRNA:   3'- ugAACGUGUUGCGgUGGC------CGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 12113 0.7 0.788468
Target:  5'- uGCUucUGCAacGCGCCGCCGGUcGCGc- -3'
miRNA:   3'- -UGA--ACGUguUGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 4515 0.7 0.788468
Target:  5'- cGCUgcgGaaaGCGGCGCacCGCCGGCUGCGg- -3'
miRNA:   3'- -UGAa--Cg--UGUUGCG--GUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 97664 0.7 0.797896
Target:  5'- --aUGCGCGACGCCGaCGGCaACGa- -3'
miRNA:   3'- ugaACGUGUUGCGGUgGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 11033 0.69 0.807163
Target:  5'- -gUUGCGCGgcaGCGCCACCgacgcGGCcaccGCGUCg -3'
miRNA:   3'- ugAACGUGU---UGCGGUGG-----CCGa---UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 39061 0.69 0.807163
Target:  5'- cGCaaGCGCAugGCCAUUGuGCgccgcgGCGUCg -3'
miRNA:   3'- -UGaaCGUGUugCGGUGGC-CGa-----UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 99553 0.69 0.807163
Target:  5'- cGC-UGCGCGacccgcugGCGCCGCCGGUgcgGCGc- -3'
miRNA:   3'- -UGaACGUGU--------UGCGGUGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 129176 0.69 0.807163
Target:  5'- -gUUGCcccaGGCGCCGCCGGCgccGCAa- -3'
miRNA:   3'- ugAACGug--UUGCGGUGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 118487 0.69 0.816258
Target:  5'- gGCUaGCACGcACGCCAaguguCCGGCgUGCAg- -3'
miRNA:   3'- -UGAaCGUGU-UGCGGU-----GGCCG-AUGUag -5'
6728 5' -53.5 NC_001875.2 + 77695 0.69 0.825172
Target:  5'- uAUUUGCGCGACuGCCGCCGuccGCUuGCAc- -3'
miRNA:   3'- -UGAACGUGUUG-CGGUGGC---CGA-UGUag -5'
6728 5' -53.5 NC_001875.2 + 117942 0.69 0.833896
Target:  5'- gGCgUGCGCGcCGCCGCguuUGGUUugGUCg -3'
miRNA:   3'- -UGaACGUGUuGCGGUG---GCCGAugUAG- -5'
6728 5' -53.5 NC_001875.2 + 27338 0.69 0.833896
Target:  5'- ---cGgACGGCGUuuCGCCGGCUcGCAUCa -3'
miRNA:   3'- ugaaCgUGUUGCG--GUGGCCGA-UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 81360 0.69 0.842422
Target:  5'- ---cGCGCGcACG-CGCCGGCcGCGUCg -3'
miRNA:   3'- ugaaCGUGU-UGCgGUGGCCGaUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.