miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 712 1.09 0.003776
Target:  5'- gACUUGCACAACGCCACCGGCUACAUCc -3'
miRNA:   3'- -UGAACGUGUUGCGGUGGCCGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 9800 0.84 0.150111
Target:  5'- uACUUGCACGGCGCCAUCGGCgGCu-- -3'
miRNA:   3'- -UGAACGUGUUGCGGUGGCCGaUGuag -5'
6728 5' -53.5 NC_001875.2 + 95504 0.8 0.258152
Target:  5'- gACgcgUGCACGuGCGCCGCCGGUUACGa- -3'
miRNA:   3'- -UGa--ACGUGU-UGCGGUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 37112 0.8 0.29184
Target:  5'- uGCggGCGCGGCGCCgcGCCGGCguuUGCGUCu -3'
miRNA:   3'- -UGaaCGUGUUGCGG--UGGCCG---AUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 31703 0.77 0.412918
Target:  5'- cGCUUGC---GCGCCGCCGGC-GCAUUa -3'
miRNA:   3'- -UGAACGuguUGCGGUGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 119061 0.75 0.48895
Target:  5'- uGCgcaugUGCGCGGCGCC-CCGGCUggACAa- -3'
miRNA:   3'- -UGa----ACGUGUUGCGGuGGCCGA--UGUag -5'
6728 5' -53.5 NC_001875.2 + 98803 0.75 0.519127
Target:  5'- cGCgcgGCGCGGCGcCCGCCGcGCUGCGc- -3'
miRNA:   3'- -UGaa-CGUGUUGC-GGUGGC-CGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 7067 0.74 0.550013
Target:  5'- cGC-UGCgGCGACGCCACCGGCcugUGCGc- -3'
miRNA:   3'- -UGaACG-UGUUGCGGUGGCCG---AUGUag -5'
6728 5' -53.5 NC_001875.2 + 126987 0.74 0.564624
Target:  5'- cACUUGUGCAcuuuGCGCCGCCucggucuccauuauuGGCUGCAa- -3'
miRNA:   3'- -UGAACGUGU----UGCGGUGG---------------CCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 32228 0.74 0.569867
Target:  5'- cACUUGCAgAACGCCaacgcgcagacauACCGGCgcgACAa- -3'
miRNA:   3'- -UGAACGUgUUGCGG-------------UGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 74270 0.73 0.588834
Target:  5'- ---aGCGCGACGCCgcGCCGGUUuacgcgcgaacagcGCAUCg -3'
miRNA:   3'- ugaaCGUGUUGCGG--UGGCCGA--------------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 3529 0.73 0.623859
Target:  5'- uUUUGCGCAuuuggcgcACGUCACCGGCgccguggcGCGUCu -3'
miRNA:   3'- uGAACGUGU--------UGCGGUGGCCGa-------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 122126 0.72 0.645142
Target:  5'- cGCUucggGCGCGGCGCgGCCGGCgcGCAc- -3'
miRNA:   3'- -UGAa---CGUGUUGCGgUGGCCGa-UGUag -5'
6728 5' -53.5 NC_001875.2 + 39470 0.72 0.66638
Target:  5'- ---cGCGCGcACGCCGCCGGC-ACGg- -3'
miRNA:   3'- ugaaCGUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 41715 0.72 0.66638
Target:  5'- --aUGCGCGGCGCUGCgCGGCgucGCAUUc -3'
miRNA:   3'- ugaACGUGUUGCGGUG-GCCGa--UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 30603 0.72 0.687497
Target:  5'- ---cGCGCAACGCgCGCCaGCUGCGc- -3'
miRNA:   3'- ugaaCGUGUUGCG-GUGGcCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 114348 0.72 0.687497
Target:  5'- aACUUGCGCAAuCGCgCGCUGGCggugaagcugGCGUUu -3'
miRNA:   3'- -UGAACGUGUU-GCG-GUGGCCGa---------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 122557 0.72 0.687497
Target:  5'- aAUUUGUucaACAAUGCCACCGaGCUGCc-- -3'
miRNA:   3'- -UGAACG---UGUUGCGGUGGC-CGAUGuag -5'
6728 5' -53.5 NC_001875.2 + 62187 0.71 0.697987
Target:  5'- aGCUUGCGCAGCaGCgCGauGGCgACAUCg -3'
miRNA:   3'- -UGAACGUGUUG-CG-GUggCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 18164 0.71 0.715676
Target:  5'- gGCgcGCGCGACGCCgccacuguggcgguGCCGGCggGCGUa -3'
miRNA:   3'- -UGaaCGUGUUGCGG--------------UGGCCGa-UGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.