miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 712 1.09 0.003776
Target:  5'- gACUUGCACAACGCCACCGGCUACAUCc -3'
miRNA:   3'- -UGAACGUGUUGCGGUGGCCGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 3529 0.73 0.623859
Target:  5'- uUUUGCGCAuuuggcgcACGUCACCGGCgccguggcGCGUCu -3'
miRNA:   3'- uGAACGUGU--------UGCGGUGGCCGa-------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 4515 0.7 0.788468
Target:  5'- cGCUgcgGaaaGCGGCGCacCGCCGGCUGCGg- -3'
miRNA:   3'- -UGAa--Cg--UGUUGCG--GUGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 4536 0.67 0.915228
Target:  5'- gAUUUGaGCAgcGCGCCACgCGGCaACAUg -3'
miRNA:   3'- -UGAACgUGU--UGCGGUG-GCCGaUGUAg -5'
6728 5' -53.5 NC_001875.2 + 6080 0.66 0.926817
Target:  5'- cACcUGCGCGGCGCUacccaacgccauGCCGGCgcuguacgacUACAUg -3'
miRNA:   3'- -UGaACGUGUUGCGG------------UGGCCG----------AUGUAg -5'
6728 5' -53.5 NC_001875.2 + 7067 0.74 0.550013
Target:  5'- cGC-UGCgGCGACGCCACCGGCcugUGCGc- -3'
miRNA:   3'- -UGaACG-UGUUGCGGUGGCCG---AUGUag -5'
6728 5' -53.5 NC_001875.2 + 7547 0.68 0.888988
Target:  5'- --aUGCGCAACGaccugaCGCCGGCggACGa- -3'
miRNA:   3'- ugaACGUGUUGCg-----GUGGCCGa-UGUag -5'
6728 5' -53.5 NC_001875.2 + 8151 0.66 0.9469
Target:  5'- -gUUGCGCAAUcaGCCGCCGGU--CAa- -3'
miRNA:   3'- ugAACGUGUUG--CGGUGGCCGauGUag -5'
6728 5' -53.5 NC_001875.2 + 9800 0.84 0.150111
Target:  5'- uACUUGCACGGCGCCAUCGGCgGCu-- -3'
miRNA:   3'- -UGAACGUGUUGCGGUGGCCGaUGuag -5'
6728 5' -53.5 NC_001875.2 + 9892 0.66 0.937372
Target:  5'- ---cGUACAACgacaGUCGCCGGCUgGCGUUc -3'
miRNA:   3'- ugaaCGUGUUG----CGGUGGCCGA-UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 10200 0.68 0.881806
Target:  5'- --cUGCACGGCGUagucgagcagCugUGGCUugAUCa -3'
miRNA:   3'- ugaACGUGUUGCG----------GugGCCGAugUAG- -5'
6728 5' -53.5 NC_001875.2 + 10611 0.66 0.926817
Target:  5'- cACUga-GC-GCGCCGCCGcGCcGCGUCa -3'
miRNA:   3'- -UGAacgUGuUGCGGUGGC-CGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 11033 0.69 0.807163
Target:  5'- -gUUGCGCGgcaGCGCCACCgacgcGGCcaccGCGUCg -3'
miRNA:   3'- ugAACGUGU---UGCGGUGG-----CCGa---UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 11203 0.66 0.937372
Target:  5'- ---aGCACGACGCCgcGCCGGaCgagaaggcCGUCa -3'
miRNA:   3'- ugaaCGUGUUGCGG--UGGCC-Gau------GUAG- -5'
6728 5' -53.5 NC_001875.2 + 11934 0.67 0.915228
Target:  5'- cGCgcgGCGCGccgacugugcGCGCgACCGGCggcGCGUUg -3'
miRNA:   3'- -UGaa-CGUGU----------UGCGgUGGCCGa--UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 12113 0.7 0.788468
Target:  5'- uGCUucUGCAacGCGCCGCCGGUcGCGc- -3'
miRNA:   3'- -UGA--ACGUguUGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 12450 0.67 0.902612
Target:  5'- ---cGCACAcgGCGgCguGCCGGCUGCAc- -3'
miRNA:   3'- ugaaCGUGU--UGCgG--UGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 17326 0.68 0.850741
Target:  5'- aGC-UGCugGcgguuGCGCCGCCGcGCgaccGCGUCa -3'
miRNA:   3'- -UGaACGugU-----UGCGGUGGC-CGa---UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 18164 0.71 0.715676
Target:  5'- gGCgcGCGCGACGCCgccacuguggcgguGCCGGCggGCGUa -3'
miRNA:   3'- -UGaaCGUGUUGCGG--------------UGGCCGa-UGUAg -5'
6728 5' -53.5 NC_001875.2 + 21253 0.67 0.902612
Target:  5'- aGCUgguccagGCGCGcGCGCgGCgCGGCUACGa- -3'
miRNA:   3'- -UGAa------CGUGU-UGCGgUG-GCCGAUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.