miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 129337 0.66 0.932224
Target:  5'- uACUUGCG--GCGCCGgCGGCgccugggGCAa- -3'
miRNA:   3'- -UGAACGUguUGCGGUgGCCGa------UGUag -5'
6728 5' -53.5 NC_001875.2 + 129176 0.69 0.807163
Target:  5'- -gUUGCcccaGGCGCCGCCGGCgccGCAa- -3'
miRNA:   3'- ugAACGug--UUGCGGUGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 128668 0.66 0.937372
Target:  5'- --gUGCGCG--GCCGCCGGCU-CAc- -3'
miRNA:   3'- ugaACGUGUugCGGUGGCCGAuGUag -5'
6728 5' -53.5 NC_001875.2 + 126987 0.74 0.564624
Target:  5'- cACUUGUGCAcuuuGCGCCGCCucggucuccauuauuGGCUGCAa- -3'
miRNA:   3'- -UGAACGUGU----UGCGGUGG---------------CCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 122557 0.72 0.687497
Target:  5'- aAUUUGUucaACAAUGCCACCGaGCUGCc-- -3'
miRNA:   3'- -UGAACG---UGUUGCGGUGGC-CGAUGuag -5'
6728 5' -53.5 NC_001875.2 + 122126 0.72 0.645142
Target:  5'- cGCUucggGCGCGGCGCgGCCGGCgcGCAc- -3'
miRNA:   3'- -UGAa---CGUGUUGCGgUGGCCGa-UGUag -5'
6728 5' -53.5 NC_001875.2 + 121918 0.66 0.926817
Target:  5'- ---gGCACAGCauaGCCAUugCGGCcACAUCu -3'
miRNA:   3'- ugaaCGUGUUG---CGGUG--GCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 119742 0.67 0.909047
Target:  5'- uGCUggUGUACcgccaaaguCGCCGCCGG-UGCGUCu -3'
miRNA:   3'- -UGA--ACGUGuu-------GCGGUGGCCgAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 119061 0.75 0.48895
Target:  5'- uGCgcaugUGCGCGGCGCC-CCGGCUggACAa- -3'
miRNA:   3'- -UGa----ACGUGUUGCGGuGGCCGA--UGUag -5'
6728 5' -53.5 NC_001875.2 + 119004 0.66 0.926817
Target:  5'- uGCUaGC-CGGCGCCGCCGGgUuuGUg -3'
miRNA:   3'- -UGAaCGuGUUGCGGUGGCCgAugUAg -5'
6728 5' -53.5 NC_001875.2 + 118487 0.69 0.816258
Target:  5'- gGCUaGCACGcACGCCAaguguCCGGCgUGCAg- -3'
miRNA:   3'- -UGAaCGUGU-UGCGGU-----GGCCG-AUGUag -5'
6728 5' -53.5 NC_001875.2 + 118474 0.66 0.937372
Target:  5'- cACcUGCAgcGCGCgGCCGGCcGCcUCg -3'
miRNA:   3'- -UGaACGUguUGCGgUGGCCGaUGuAG- -5'
6728 5' -53.5 NC_001875.2 + 118095 0.71 0.729055
Target:  5'- cACUuugUGCGCGACGCCGCgcgagUGGUggagaGCAUCa -3'
miRNA:   3'- -UGA---ACGUGUUGCGGUG-----GCCGa----UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 117942 0.69 0.833896
Target:  5'- gGCgUGCGCGcCGCCGCguuUGGUUugGUCg -3'
miRNA:   3'- -UGaACGUGUuGCGGUG---GCCGAugUAG- -5'
6728 5' -53.5 NC_001875.2 + 117329 0.65 0.949995
Target:  5'- gGCUUGaCACGGCGCggcgCgggcgaaccggcggGCCGGCUGgcCGUCg -3'
miRNA:   3'- -UGAAC-GUGUUGCG----G--------------UGGCCGAU--GUAG- -5'
6728 5' -53.5 NC_001875.2 + 116577 0.71 0.739245
Target:  5'- ---aGCACcACGCCGCCGGUggUGCGc- -3'
miRNA:   3'- ugaaCGUGuUGCGGUGGCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 114348 0.72 0.687497
Target:  5'- aACUUGCGCAAuCGCgCGCUGGCggugaagcugGCGUUu -3'
miRNA:   3'- -UGAACGUGUU-GCG-GUGGCCGa---------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 113053 0.67 0.895241
Target:  5'- ---aGCACAAUGCCcacuacagaGCUGGCUuugauggcgacgcGCGUCa -3'
miRNA:   3'- ugaaCGUGUUGCGG---------UGGCCGA-------------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 112573 0.68 0.850741
Target:  5'- uGCUUGCgacuGCGGCGaagGCCGGgaACGUCg -3'
miRNA:   3'- -UGAACG----UGUUGCgg-UGGCCgaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 107720 0.71 0.749332
Target:  5'- aGCUUGUGCGACGgCGCCGcGCU-UGUCc -3'
miRNA:   3'- -UGAACGUGUUGCgGUGGC-CGAuGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.