miRNA display CGI


Results 1 - 20 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 117329 0.65 0.949995
Target:  5'- gGCUUGaCACGGCGCggcgCgggcgaaccggcggGCCGGCUGgcCGUCg -3'
miRNA:   3'- -UGAAC-GUGUUGCG----G--------------UGGCCGAU--GUAG- -5'
6728 5' -53.5 NC_001875.2 + 50985 0.66 0.937372
Target:  5'- ---cGCGCGACGCguugcUGCCGGuCUACAa- -3'
miRNA:   3'- ugaaCGUGUUGCG-----GUGGCC-GAUGUag -5'
6728 5' -53.5 NC_001875.2 + 38469 0.66 0.932224
Target:  5'- uCUUGCA---UGCCGCCGGCcuUGUCg -3'
miRNA:   3'- uGAACGUguuGCGGUGGCCGauGUAG- -5'
6728 5' -53.5 NC_001875.2 + 58107 0.66 0.926817
Target:  5'- --cUGCACGAUuagCGCCGGCaugGCGUCg -3'
miRNA:   3'- ugaACGUGUUGcg-GUGGCCGa--UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 129337 0.66 0.932224
Target:  5'- uACUUGCG--GCGCCGgCGGCgccugggGCAa- -3'
miRNA:   3'- -UGAACGUguUGCGGUgGCCGa------UGUag -5'
6728 5' -53.5 NC_001875.2 + 10611 0.66 0.926817
Target:  5'- cACUga-GC-GCGCCGCCGcGCcGCGUCa -3'
miRNA:   3'- -UGAacgUGuUGCGGUGGC-CGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 121918 0.66 0.926817
Target:  5'- ---gGCACAGCauaGCCAUugCGGCcACAUCu -3'
miRNA:   3'- ugaaCGUGUUG---CGGUG--GCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 119004 0.66 0.926817
Target:  5'- uGCUaGC-CGGCGCCGCCGGgUuuGUg -3'
miRNA:   3'- -UGAaCGuGUUGCGGUGGCCgAugUAg -5'
6728 5' -53.5 NC_001875.2 + 70635 0.66 0.926817
Target:  5'- cAUUUGUACGACGgCGCCGcGuUUGCGUg -3'
miRNA:   3'- -UGAACGUGUUGCgGUGGC-C-GAUGUAg -5'
6728 5' -53.5 NC_001875.2 + 90527 0.66 0.948242
Target:  5'- gGCgcGCGCGGCGUgucuuguguggucugCGCCGGCcggucggccaauuUGCAUCg -3'
miRNA:   3'- -UGaaCGUGUUGCG---------------GUGGCCG-------------AUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 6080 0.66 0.926817
Target:  5'- cACcUGCGCGGCGCUacccaacgccauGCCGGCgcuguacgacUACAUg -3'
miRNA:   3'- -UGaACGUGUUGCGG------------UGGCCG----------AUGUAg -5'
6728 5' -53.5 NC_001875.2 + 49632 0.66 0.941786
Target:  5'- gACUUccaGCgGCGACacgagcgGCCGCCGGCgccCAUCg -3'
miRNA:   3'- -UGAA---CG-UGUUG-------CGGUGGCCGau-GUAG- -5'
6728 5' -53.5 NC_001875.2 + 128668 0.66 0.937372
Target:  5'- --gUGCGCG--GCCGCCGGCU-CAc- -3'
miRNA:   3'- ugaACGUGUugCGGUGGCCGAuGUag -5'
6728 5' -53.5 NC_001875.2 + 38358 0.66 0.932224
Target:  5'- cGCUUGCGCcaaguguguUGCCACCcGGCgcugACAa- -3'
miRNA:   3'- -UGAACGUGuu-------GCGGUGG-CCGa---UGUag -5'
6728 5' -53.5 NC_001875.2 + 56239 0.66 0.942264
Target:  5'- aACUcGUAC-ACGCCggcGCgCGGCUGCAg- -3'
miRNA:   3'- -UGAaCGUGuUGCGG---UG-GCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 39229 0.66 0.926817
Target:  5'- ---aGCACGACGCCG-CGGC-GCAc- -3'
miRNA:   3'- ugaaCGUGUUGCGGUgGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 118474 0.66 0.937372
Target:  5'- cACcUGCAgcGCGCgGCCGGCcGCcUCg -3'
miRNA:   3'- -UGaACGUguUGCGgUGGCCGaUGuAG- -5'
6728 5' -53.5 NC_001875.2 + 49325 0.66 0.942264
Target:  5'- -gUUGCACGG-GCCGCCcgaggagcGCUACAUUg -3'
miRNA:   3'- ugAACGUGUUgCGGUGGc-------CGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 81299 0.66 0.9469
Target:  5'- ---aGaCACGcGCGCCGCCGGCgGCGc- -3'
miRNA:   3'- ugaaC-GUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 29259 0.66 0.942264
Target:  5'- uGCgggUGCGCGGcCGCCgaccgcGCCGGCgggGCgcgGUCg -3'
miRNA:   3'- -UGa--ACGUGUU-GCGG------UGGCCGa--UG---UAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.