miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 29259 0.66 0.942264
Target:  5'- uGCgggUGCGCGGcCGCCgaccgcGCCGGCgggGCgcgGUCg -3'
miRNA:   3'- -UGa--ACGUGUU-GCGG------UGGCCGa--UG---UAG- -5'
6728 5' -53.5 NC_001875.2 + 38358 0.66 0.932224
Target:  5'- cGCUUGCGCcaaguguguUGCCACCcGGCgcugACAa- -3'
miRNA:   3'- -UGAACGUGuu-------GCGGUGG-CCGa---UGUag -5'
6728 5' -53.5 NC_001875.2 + 81299 0.66 0.9469
Target:  5'- ---aGaCACGcGCGCCGCCGGCgGCGc- -3'
miRNA:   3'- ugaaC-GUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 11203 0.66 0.937372
Target:  5'- ---aGCACGACGCCgcGCCGGaCgagaaggcCGUCa -3'
miRNA:   3'- ugaaCGUGUUGCGG--UGGCC-Gau------GUAG- -5'
6728 5' -53.5 NC_001875.2 + 64625 0.66 0.942264
Target:  5'- ---cGCGacuCGuCCACCGGCU-CGUCg -3'
miRNA:   3'- ugaaCGUguuGC-GGUGGCCGAuGUAG- -5'
6728 5' -53.5 NC_001875.2 + 10611 0.66 0.926817
Target:  5'- cACUga-GC-GCGCCGCCGcGCcGCGUCa -3'
miRNA:   3'- -UGAacgUGuUGCGGUGGC-CGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 45876 0.66 0.937372
Target:  5'- cGCgUGgACGugGCCAUCGGCagUGCGc- -3'
miRNA:   3'- -UGaACgUGUugCGGUGGCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 70635 0.66 0.926817
Target:  5'- cAUUUGUACGACGgCGCCGcGuUUGCGUg -3'
miRNA:   3'- -UGAACGUGUUGCgGUGGC-C-GAUGUAg -5'
6728 5' -53.5 NC_001875.2 + 21253 0.67 0.902612
Target:  5'- aGCUgguccagGCGCGcGCGCgGCgCGGCUACGa- -3'
miRNA:   3'- -UGAa------CGUGU-UGCGgUG-GCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 37897 0.67 0.915228
Target:  5'- gGCUUGCugGcGCGgCACUGGC-ACcgCg -3'
miRNA:   3'- -UGAACGugU-UGCgGUGGCCGaUGuaG- -5'
6728 5' -53.5 NC_001875.2 + 37583 0.67 0.909047
Target:  5'- uGCgccgGCGCgAGCGCCgcgGCCGGCcGCAc- -3'
miRNA:   3'- -UGaa--CGUG-UUGCGG---UGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 11934 0.67 0.915228
Target:  5'- cGCgcgGCGCGccgacugugcGCGCgACCGGCggcGCGUUg -3'
miRNA:   3'- -UGaa-CGUGU----------UGCGgUGGCCGa--UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 62416 0.67 0.914621
Target:  5'- uGCgUGgGCAagcguuuGCGCUgcGCCGGCUGCAa- -3'
miRNA:   3'- -UGaACgUGU-------UGCGG--UGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 35792 0.67 0.902612
Target:  5'- cACUUGCGCuGCGCCAgauaguccgcgUCGGCguuggGCGcguUCa -3'
miRNA:   3'- -UGAACGUGuUGCGGU-----------GGCCGa----UGU---AG- -5'
6728 5' -53.5 NC_001875.2 + 92749 0.67 0.921151
Target:  5'- cACUcUGCACAGCGgCAaccuuCCGGCgGCAg- -3'
miRNA:   3'- -UGA-ACGUGUUGCgGU-----GGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 36756 0.67 0.921151
Target:  5'- uGCaaGgGCGACGCgCAgCGGCUGCGc- -3'
miRNA:   3'- -UGaaCgUGUUGCG-GUgGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 4536 0.67 0.915228
Target:  5'- gAUUUGaGCAgcGCGCCACgCGGCaACAUg -3'
miRNA:   3'- -UGAACgUGU--UGCGGUG-GCCGaUGUAg -5'
6728 5' -53.5 NC_001875.2 + 57554 0.67 0.895924
Target:  5'- uUUUGCACAACGCCAaucgCGuGC-ACAUg -3'
miRNA:   3'- uGAACGUGUUGCGGUg---GC-CGaUGUAg -5'
6728 5' -53.5 NC_001875.2 + 12450 0.67 0.902612
Target:  5'- ---cGCACAcgGCGgCguGCCGGCUGCAc- -3'
miRNA:   3'- ugaaCGUGU--UGCgG--UGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 68716 0.67 0.917628
Target:  5'- cGCggUGCGCGAcCGCCGCCGccgcggcggcaaaccGCUGC-UCc -3'
miRNA:   3'- -UGa-ACGUGUU-GCGGUGGC---------------CGAUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.