miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 27338 0.69 0.833896
Target:  5'- ---cGgACGGCGUuuCGCCGGCUcGCAUCa -3'
miRNA:   3'- ugaaCgUGUUGCG--GUGGCCGA-UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 29259 0.66 0.942264
Target:  5'- uGCgggUGCGCGGcCGCCgaccgcGCCGGCgggGCgcgGUCg -3'
miRNA:   3'- -UGa--ACGUGUU-GCGG------UGGCCGa--UG---UAG- -5'
6728 5' -53.5 NC_001875.2 + 29867 0.68 0.891792
Target:  5'- --aUGCACAACGCCugcgucgcguucgccACCGGCg----- -3'
miRNA:   3'- ugaACGUGUUGCGG---------------UGGCCGauguag -5'
6728 5' -53.5 NC_001875.2 + 30603 0.72 0.687497
Target:  5'- ---cGCGCAACGCgCGCCaGCUGCGc- -3'
miRNA:   3'- ugaaCGUGUUGCG-GUGGcCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 31703 0.77 0.412918
Target:  5'- cGCUUGC---GCGCCGCCGGC-GCAUUa -3'
miRNA:   3'- -UGAACGuguUGCGGUGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 32228 0.74 0.569867
Target:  5'- cACUUGCAgAACGCCaacgcgcagacauACCGGCgcgACAa- -3'
miRNA:   3'- -UGAACGUgUUGCGG-------------UGGCCGa--UGUag -5'
6728 5' -53.5 NC_001875.2 + 35792 0.67 0.902612
Target:  5'- cACUUGCGCuGCGCCAgauaguccgcgUCGGCguuggGCGcguUCa -3'
miRNA:   3'- -UGAACGUGuUGCGGU-----------GGCCGa----UGU---AG- -5'
6728 5' -53.5 NC_001875.2 + 35867 0.68 0.882535
Target:  5'- -gUUGCGCAGCGCguuugauggaauugaGCCGGC-GCGUUg -3'
miRNA:   3'- ugAACGUGUUGCGg--------------UGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 36756 0.67 0.921151
Target:  5'- uGCaaGgGCGACGCgCAgCGGCUGCGc- -3'
miRNA:   3'- -UGaaCgUGUUGCG-GUgGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 37112 0.8 0.29184
Target:  5'- uGCggGCGCGGCGCCgcGCCGGCguuUGCGUCu -3'
miRNA:   3'- -UGaaCGUGUUGCGG--UGGCCG---AUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 37583 0.67 0.909047
Target:  5'- uGCgccgGCGCgAGCGCCgcgGCCGGCcGCAc- -3'
miRNA:   3'- -UGaa--CGUG-UUGCGG---UGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 37741 0.67 0.902612
Target:  5'- gGCcgGcCGCGGCGCUcgcGCCGGC-GCAUCc -3'
miRNA:   3'- -UGaaC-GUGUUGCGG---UGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 37897 0.67 0.915228
Target:  5'- gGCUUGCugGcGCGgCACUGGC-ACcgCg -3'
miRNA:   3'- -UGAACGugU-UGCgGUGGCCGaUGuaG- -5'
6728 5' -53.5 NC_001875.2 + 38358 0.66 0.932224
Target:  5'- cGCUUGCGCcaaguguguUGCCACCcGGCgcugACAa- -3'
miRNA:   3'- -UGAACGUGuu-------GCGGUGG-CCGa---UGUag -5'
6728 5' -53.5 NC_001875.2 + 38469 0.66 0.932224
Target:  5'- uCUUGCA---UGCCGCCGGCcuUGUCg -3'
miRNA:   3'- uGAACGUguuGCGGUGGCCGauGUAG- -5'
6728 5' -53.5 NC_001875.2 + 39061 0.69 0.807163
Target:  5'- cGCaaGCGCAugGCCAUUGuGCgccgcgGCGUCg -3'
miRNA:   3'- -UGaaCGUGUugCGGUGGC-CGa-----UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 39229 0.66 0.926817
Target:  5'- ---aGCACGACGCCG-CGGC-GCAc- -3'
miRNA:   3'- ugaaCGUGUUGCGGUgGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 39470 0.72 0.66638
Target:  5'- ---cGCGCGcACGCCGCCGGC-ACGg- -3'
miRNA:   3'- ugaaCGUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 40094 0.68 0.881806
Target:  5'- ---gGCGCugacGCGCCACUGGCUGg--- -3'
miRNA:   3'- ugaaCGUGu---UGCGGUGGCCGAUguag -5'
6728 5' -53.5 NC_001875.2 + 40260 0.68 0.86673
Target:  5'- gGCaaGUACAGCGCCAgCCaguGGC-GCGUCa -3'
miRNA:   3'- -UGaaCGUGUUGCGGU-GG---CCGaUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.