Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 45753 | 0.7 | 0.333271 |
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Target: 5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3' miRNA: 3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 99752 | 0.71 | 0.319007 |
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Target: 5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3' miRNA: 3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 54906 | 0.71 | 0.29187 |
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Target: 5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3' miRNA: 3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 21836 | 0.71 | 0.285373 |
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Target: 5'- cCAACGUUuugaGUGCGCgCUUGGcCUCCGCCu -3' miRNA: 3'- -GUUGCGA----CACGCG-GAGCCcGGGGCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 12298 | 0.73 | 0.231988 |
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Target: 5'- aAGCGCUGguUGCG-CUCGGGCUCuuccgCGCCg -3' miRNA: 3'- gUUGCGAC--ACGCgGAGCCCGGG-----GCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 110503 | 0.73 | 0.231988 |
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Target: 5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3' miRNA: 3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 42903 | 0.74 | 0.206126 |
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Target: 5'- uCGAgGCUGUGCGCCgcaugccgUGGGCgUCGCa -3' miRNA: 3'- -GUUgCGACACGCGGa-------GCCCGgGGCGg -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 70385 | 0.74 | 0.205635 |
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Target: 5'- gCGGCGCUucgggcugugucGgcgGCGCCUCGGGCgCCCaguggucGCCg -3' miRNA: 3'- -GUUGCGA------------Ca--CGCGGAGCCCG-GGG-------CGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 1192 | 1.11 | 0.000446 |
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Target: 5'- cCAACGCUGUGCGCCUCGGGCCCCGCCa -3' miRNA: 3'- -GUUGCGACACGCGGAGCCCGGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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