miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 72593 0.68 0.444826
Target:  5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3'
miRNA:   3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5'
6729 3' -62.8 NC_001875.2 + 10393 0.68 0.428358
Target:  5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3'
miRNA:   3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 39218 0.68 0.428358
Target:  5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3'
miRNA:   3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 67594 0.68 0.428358
Target:  5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3'
miRNA:   3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 18297 0.68 0.428358
Target:  5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3'
miRNA:   3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 84855 0.68 0.428358
Target:  5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3'
miRNA:   3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 89116 0.69 0.403106
Target:  5'- --uCGUUGcagGUGUUUgGGGUCCCGCCg -3'
miRNA:   3'- guuGCGACa--CGCGGAgCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70204 0.69 0.403106
Target:  5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3'
miRNA:   3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 128699 0.69 0.403106
Target:  5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3'
miRNA:   3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54609 0.69 0.403106
Target:  5'- -cACGCUGUGCGgCgcCGcGGCUaacgaCCGCCa -3'
miRNA:   3'- guUGCGACACGCgGa-GC-CCGG-----GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 74182 0.69 0.394901
Target:  5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3'
miRNA:   3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 19823 0.69 0.386804
Target:  5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3'
miRNA:   3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12178 0.69 0.378818
Target:  5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3'
miRNA:   3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 56625 0.69 0.378818
Target:  5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3'
miRNA:   3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98794 0.7 0.370943
Target:  5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3'
miRNA:   3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 44159 0.7 0.355531
Target:  5'- -cACGCUGggcacgGCGCCcgUCGGGCUguCCGUg -3'
miRNA:   3'- guUGCGACa-----CGCGG--AGCCCGG--GGCGg -5'
6729 3' -62.8 NC_001875.2 + 98037 0.7 0.347996
Target:  5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3'
miRNA:   3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 13042 0.7 0.347996
Target:  5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3'
miRNA:   3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 63618 0.7 0.340576
Target:  5'- uGugGCUGgaaaccaaCGCCUCGcGGCUggCCGCCg -3'
miRNA:   3'- gUugCGACac------GCGGAGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 45753 0.7 0.333271
Target:  5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3'
miRNA:   3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.