miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 62351 0.67 0.528157
Target:  5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3'
miRNA:   3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 49532 0.67 0.528157
Target:  5'- cCAGuCGCUG-GUGCUggacuUgGGGCCCgaCGCCa -3'
miRNA:   3'- -GUU-GCGACaCGCGG-----AgCCCGGG--GCGG- -5'
6729 3' -62.8 NC_001875.2 + 41451 0.67 0.528157
Target:  5'- aCAACGCguuuaGCGCCaUCGacgaGCCCgGCCu -3'
miRNA:   3'- -GUUGCGaca--CGCGG-AGCc---CGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 5924 0.67 0.528157
Target:  5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3'
miRNA:   3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 39321 0.67 0.528157
Target:  5'- gCAAcCGCcGgccCGCCUCGcGGCCCCaaaaugGCCa -3'
miRNA:   3'- -GUU-GCGaCac-GCGGAGC-CCGGGG------CGG- -5'
6729 3' -62.8 NC_001875.2 + 85222 0.67 0.51963
Target:  5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3'
miRNA:   3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 41328 0.67 0.518686
Target:  5'- -uACGCUG-GCGCUg-GGGCUgCGCa -3'
miRNA:   3'- guUGCGACaCGCGGagCCCGGgGCGg -5'
6729 3' -62.8 NC_001875.2 + 39068 0.67 0.518686
Target:  5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3'
miRNA:   3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98965 0.67 0.518686
Target:  5'- aAGCGCa--GCGCggCGGGCgCCgCGCCg -3'
miRNA:   3'- gUUGCGacaCGCGgaGCCCG-GG-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 52448 0.67 0.517742
Target:  5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3'
miRNA:   3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 124719 0.67 0.509283
Target:  5'- aAACGgUGUGcCGCCaaagCGa-CCCCGCCg -3'
miRNA:   3'- gUUGCgACAC-GCGGa---GCccGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 44609 0.67 0.499952
Target:  5'- uGGCGCacUGCGCCgaCGGcGCCuuGCUg -3'
miRNA:   3'- gUUGCGacACGCGGa-GCC-CGGggCGG- -5'
6729 3' -62.8 NC_001875.2 + 72557 0.67 0.499952
Target:  5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3'
miRNA:   3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5'
6729 3' -62.8 NC_001875.2 + 129332 0.67 0.481524
Target:  5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3'
miRNA:   3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5'
6729 3' -62.8 NC_001875.2 + 99555 0.67 0.481524
Target:  5'- -uGCGCUGcGCGaCCcgCuGGCgCCGCCg -3'
miRNA:   3'- guUGCGACaCGC-GGa-GcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70922 0.67 0.481524
Target:  5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3'
miRNA:   3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 112517 0.68 0.472435
Target:  5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3'
miRNA:   3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5'
6729 3' -62.8 NC_001875.2 + 38131 0.68 0.472435
Target:  5'- uCGGCGCUGaGCGCg-CaGGCCgCCGCg -3'
miRNA:   3'- -GUUGCGACaCGCGgaGcCCGG-GGCGg -5'
6729 3' -62.8 NC_001875.2 + 17085 0.68 0.454521
Target:  5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3'
miRNA:   3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 99342 0.68 0.445703
Target:  5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3'
miRNA:   3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.