Results 21 - 40 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 128699 | 0.69 | 0.403106 |
Target: 5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3' miRNA: 3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 70204 | 0.69 | 0.403106 |
Target: 5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3' miRNA: 3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 54609 | 0.69 | 0.403106 |
Target: 5'- -cACGCUGUGCGgCgcCGcGGCUaacgaCCGCCa -3' miRNA: 3'- guUGCGACACGCgGa-GC-CCGG-----GGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 84855 | 0.68 | 0.428358 |
Target: 5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3' miRNA: 3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 67594 | 0.68 | 0.428358 |
Target: 5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3' miRNA: 3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 39218 | 0.68 | 0.428358 |
Target: 5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3' miRNA: 3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 18297 | 0.68 | 0.428358 |
Target: 5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3' miRNA: 3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 10393 | 0.68 | 0.428358 |
Target: 5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3' miRNA: 3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 72593 | 0.68 | 0.444826 |
Target: 5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3' miRNA: 3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 99342 | 0.68 | 0.445703 |
Target: 5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3' miRNA: 3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 17085 | 0.68 | 0.454521 |
Target: 5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3' miRNA: 3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 38131 | 0.68 | 0.472435 |
Target: 5'- uCGGCGCUGaGCGCg-CaGGCCgCCGCg -3' miRNA: 3'- -GUUGCGACaCGCGgaGcCCGG-GGCGg -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 112517 | 0.68 | 0.472435 |
Target: 5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3' miRNA: 3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 129332 | 0.67 | 0.481524 |
Target: 5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3' miRNA: 3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 70922 | 0.67 | 0.481524 |
Target: 5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3' miRNA: 3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 99555 | 0.67 | 0.481524 |
Target: 5'- -uGCGCUGcGCGaCCcgCuGGCgCCGCCg -3' miRNA: 3'- guUGCGACaCGC-GGa-GcCCGgGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 72557 | 0.67 | 0.499952 |
Target: 5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3' miRNA: 3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 44609 | 0.67 | 0.499952 |
Target: 5'- uGGCGCacUGCGCCgaCGGcGCCuuGCUg -3' miRNA: 3'- gUUGCGacACGCGGa-GCC-CGGggCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 124719 | 0.67 | 0.509283 |
Target: 5'- aAACGgUGUGcCGCCaaagCGa-CCCCGCCg -3' miRNA: 3'- gUUGCgACAC-GCGGa---GCccGGGGCGG- -5' |
|||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 52448 | 0.67 | 0.517742 |
Target: 5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3' miRNA: 3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home