Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 41328 | 0.67 | 0.518686 |
Target: 5'- -uACGCUG-GCGCUg-GGGCUgCGCa -3' miRNA: 3'- guUGCGACaCGCGGagCCCGGgGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 41451 | 0.67 | 0.528157 |
Target: 5'- aCAACGCguuuaGCGCCaUCGacgaGCCCgGCCu -3' miRNA: 3'- -GUUGCGaca--CGCGG-AGCc---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 42190 | 0.66 | 0.582223 |
Target: 5'- gCAGCGCgGgcggcagaucgugGUGCCgguuaaCGGG-CCCGCCg -3' miRNA: 3'- -GUUGCGaCa------------CGCGGa-----GCCCgGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 42903 | 0.74 | 0.206126 |
Target: 5'- uCGAgGCUGUGCGCCgcaugccgUGGGCgUCGCa -3' miRNA: 3'- -GUUgCGACACGCGGa-------GCCCGgGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 44159 | 0.7 | 0.355531 |
Target: 5'- -cACGCUGggcacgGCGCCcgUCGGGCUguCCGUg -3' miRNA: 3'- guUGCGACa-----CGCGG--AGCCCGG--GGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 44609 | 0.67 | 0.499952 |
Target: 5'- uGGCGCacUGCGCCgaCGGcGCCuuGCUg -3' miRNA: 3'- gUUGCGacACGCGGa-GCC-CGGggCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 45077 | 0.67 | 0.531963 |
Target: 5'- aGGCGCUGaaGCGCCgccuagagugcgaGGGCgagCCGCCa -3' miRNA: 3'- gUUGCGACa-CGCGGag-----------CCCGg--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 45753 | 0.7 | 0.333271 |
Target: 5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3' miRNA: 3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 49532 | 0.67 | 0.528157 |
Target: 5'- cCAGuCGCUG-GUGCUggacuUgGGGCCCgaCGCCa -3' miRNA: 3'- -GUU-GCGACaCGCGG-----AgCCCGGG--GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 52448 | 0.67 | 0.517742 |
Target: 5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3' miRNA: 3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 54331 | 0.66 | 0.5444 |
Target: 5'- gCGACGCguuuUGCGCCagCGGGCagcuuuacucuaucCCCGUg -3' miRNA: 3'- -GUUGCGac--ACGCGGa-GCCCG--------------GGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 54609 | 0.69 | 0.403106 |
Target: 5'- -cACGCUGUGCGgCgcCGcGGCUaacgaCCGCCa -3' miRNA: 3'- guUGCGACACGCgGa-GC-CCGG-----GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 54906 | 0.71 | 0.29187 |
Target: 5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3' miRNA: 3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 55328 | 0.67 | 0.537691 |
Target: 5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3' miRNA: 3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 56625 | 0.69 | 0.378818 |
Target: 5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3' miRNA: 3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62351 | 0.67 | 0.528157 |
Target: 5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3' miRNA: 3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62556 | 0.66 | 0.595942 |
Target: 5'- aAACGUUGUGCGgg-UGGacuuGCCgCCGCCa -3' miRNA: 3'- gUUGCGACACGCggaGCC----CGG-GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 63618 | 0.7 | 0.340576 |
Target: 5'- uGugGCUGgaaaccaaCGCCUCGcGGCUggCCGCCg -3' miRNA: 3'- gUugCGACac------GCGGAGC-CCGG--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 67594 | 0.68 | 0.428358 |
Target: 5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3' miRNA: 3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 67702 | 0.66 | 0.566625 |
Target: 5'- gCGACGC-GUGCuGCaaggCGGaGCUCCGCa -3' miRNA: 3'- -GUUGCGaCACG-CGga--GCC-CGGGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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