miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 1192 1.11 0.000446
Target:  5'- cCAACGCUGUGCGCCUCGGGCCCCGCCa -3'
miRNA:   3'- -GUUGCGACACGCGGAGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 5924 0.67 0.528157
Target:  5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3'
miRNA:   3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 10393 0.68 0.428358
Target:  5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3'
miRNA:   3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 10865 0.66 0.586137
Target:  5'- aCGACGCgGUGgcCGCgUCGguGGCgCUGCCg -3'
miRNA:   3'- -GUUGCGaCAC--GCGgAGC--CCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12178 0.69 0.378818
Target:  5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3'
miRNA:   3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 12298 0.73 0.231988
Target:  5'- aAGCGCUGguUGCG-CUCGGGCUCuuccgCGCCg -3'
miRNA:   3'- gUUGCGAC--ACGCgGAGCCCGGG-----GCGG- -5'
6729 3' -62.8 NC_001875.2 + 13042 0.7 0.347996
Target:  5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3'
miRNA:   3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 17085 0.68 0.454521
Target:  5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3'
miRNA:   3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 18297 0.68 0.428358
Target:  5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3'
miRNA:   3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 19823 0.69 0.386804
Target:  5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3'
miRNA:   3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5'
6729 3' -62.8 NC_001875.2 + 21836 0.71 0.285373
Target:  5'- cCAACGUUuugaGUGCGCgCUUGGcCUCCGCCu -3'
miRNA:   3'- -GUUGCGA----CACGCG-GAGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 22918 0.66 0.567597
Target:  5'- cCAGcCGCUGUGUGCCggugaugugcuggagCGGuGCgUgGCCg -3'
miRNA:   3'- -GUU-GCGACACGCGGa--------------GCC-CGgGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 31919 0.66 0.566625
Target:  5'- -cGCGCUGcaccGCGCg-CGGGC-CCGCUc -3'
miRNA:   3'- guUGCGACa---CGCGgaGCCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 36442 0.66 0.586137
Target:  5'- gGugGCUGcgGCGCaUUGGcGCUCCGUUg -3'
miRNA:   3'- gUugCGACa-CGCGgAGCC-CGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 38131 0.68 0.472435
Target:  5'- uCGGCGCUGaGCGCg-CaGGCCgCCGCg -3'
miRNA:   3'- -GUUGCGACaCGCGgaGcCCGG-GGCGg -5'
6729 3' -62.8 NC_001875.2 + 39068 0.67 0.518686
Target:  5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3'
miRNA:   3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 39218 0.68 0.428358
Target:  5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3'
miRNA:   3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 39321 0.67 0.528157
Target:  5'- gCAAcCGCcGgccCGCCUCGcGGCCCCaaaaugGCCa -3'
miRNA:   3'- -GUU-GCGaCac-GCGGAGC-CCGGGG------CGG- -5'
6729 3' -62.8 NC_001875.2 + 40239 0.66 0.595942
Target:  5'- uGGCGCgucaGCGCCgc-GGCCUCGUCg -3'
miRNA:   3'- gUUGCGaca-CGCGGagcCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 40606 0.66 0.55693
Target:  5'- aCGGCGCcgUGguggGCGCCaccaCGcGCCUCGCCu -3'
miRNA:   3'- -GUUGCG--ACa---CGCGGa---GCcCGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.