miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 131502 0.66 0.586137
Target:  5'- -cACGUUGUGCGCCUguuuuUGGcGCUCCa-- -3'
miRNA:   3'- guUGCGACACGCGGA-----GCC-CGGGGcgg -5'
6729 3' -62.8 NC_001875.2 + 130615 0.66 0.595942
Target:  5'- aCGGCGCgugcuagcgGUGCGUCagCGGcGCCCUGgUg -3'
miRNA:   3'- -GUUGCGa--------CACGCGGa-GCC-CGGGGCgG- -5'
6729 3' -62.8 NC_001875.2 + 129332 0.67 0.481524
Target:  5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3'
miRNA:   3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5'
6729 3' -62.8 NC_001875.2 + 128699 0.69 0.403106
Target:  5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3'
miRNA:   3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 124719 0.67 0.509283
Target:  5'- aAACGgUGUGcCGCCaaagCGa-CCCCGCCg -3'
miRNA:   3'- gUUGCgACAC-GCGGa---GCccGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 122107 0.66 0.576362
Target:  5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3'
miRNA:   3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5'
6729 3' -62.8 NC_001875.2 + 120682 0.66 0.566625
Target:  5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3'
miRNA:   3'- guuGCGACACGCGG-AGCccgGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 112517 0.68 0.472435
Target:  5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3'
miRNA:   3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5'
6729 3' -62.8 NC_001875.2 + 110503 0.73 0.231988
Target:  5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3'
miRNA:   3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 109878 0.66 0.595942
Target:  5'- uGGCGCUG-GCGCCgcccauCCCCGCg -3'
miRNA:   3'- gUUGCGACaCGCGGagccc-GGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 101278 0.66 0.567597
Target:  5'- aGGCGCgugcuauuuuuagcgGUGCGUCagCGGcGaCCCCGCUu -3'
miRNA:   3'- gUUGCGa--------------CACGCGGa-GCC-C-GGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 99752 0.71 0.319007
Target:  5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3'
miRNA:   3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 99555 0.67 0.481524
Target:  5'- -uGCGCUGcGCGaCCcgCuGGCgCCGCCg -3'
miRNA:   3'- guUGCGACaCGC-GGa-GcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 99342 0.68 0.445703
Target:  5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3'
miRNA:   3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98965 0.67 0.518686
Target:  5'- aAGCGCa--GCGCggCGGGCgCCgCGCCg -3'
miRNA:   3'- gUUGCGacaCGCGgaGCCCG-GG-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 98794 0.7 0.370943
Target:  5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3'
miRNA:   3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98037 0.7 0.347996
Target:  5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3'
miRNA:   3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 90401 0.66 0.566625
Target:  5'- cCGGCGcCUGUGCGCgCgcaGcGGCCCCuGUUu -3'
miRNA:   3'- -GUUGC-GACACGCG-Gag-C-CCGGGG-CGG- -5'
6729 3' -62.8 NC_001875.2 + 89116 0.69 0.403106
Target:  5'- --uCGUUGcagGUGUUUgGGGUCCCGCCg -3'
miRNA:   3'- guuGCGACa--CGCGGAgCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 85222 0.67 0.51963
Target:  5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3'
miRNA:   3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.