Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 131502 | 0.66 | 0.586137 |
Target: 5'- -cACGUUGUGCGCCUguuuuUGGcGCUCCa-- -3' miRNA: 3'- guUGCGACACGCGGA-----GCC-CGGGGcgg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 130615 | 0.66 | 0.595942 |
Target: 5'- aCGGCGCgugcuagcgGUGCGUCagCGGcGCCCUGgUg -3' miRNA: 3'- -GUUGCGa--------CACGCGGa-GCC-CGGGGCgG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 129332 | 0.67 | 0.481524 |
Target: 5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3' miRNA: 3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 128699 | 0.69 | 0.403106 |
Target: 5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3' miRNA: 3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 124719 | 0.67 | 0.509283 |
Target: 5'- aAACGgUGUGcCGCCaaagCGa-CCCCGCCg -3' miRNA: 3'- gUUGCgACAC-GCGGa---GCccGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 122107 | 0.66 | 0.576362 |
Target: 5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3' miRNA: 3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 120682 | 0.66 | 0.566625 |
Target: 5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3' miRNA: 3'- guuGCGACACGCGG-AGCccgGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 112517 | 0.68 | 0.472435 |
Target: 5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3' miRNA: 3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 110503 | 0.73 | 0.231988 |
Target: 5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3' miRNA: 3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 109878 | 0.66 | 0.595942 |
Target: 5'- uGGCGCUG-GCGCCgcccauCCCCGCg -3' miRNA: 3'- gUUGCGACaCGCGGagccc-GGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 101278 | 0.66 | 0.567597 |
Target: 5'- aGGCGCgugcuauuuuuagcgGUGCGUCagCGGcGaCCCCGCUu -3' miRNA: 3'- gUUGCGa--------------CACGCGGa-GCC-C-GGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99752 | 0.71 | 0.319007 |
Target: 5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3' miRNA: 3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99555 | 0.67 | 0.481524 |
Target: 5'- -uGCGCUGcGCGaCCcgCuGGCgCCGCCg -3' miRNA: 3'- guUGCGACaCGC-GGa-GcCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99342 | 0.68 | 0.445703 |
Target: 5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3' miRNA: 3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98965 | 0.67 | 0.518686 |
Target: 5'- aAGCGCa--GCGCggCGGGCgCCgCGCCg -3' miRNA: 3'- gUUGCGacaCGCGgaGCCCG-GG-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98794 | 0.7 | 0.370943 |
Target: 5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3' miRNA: 3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98037 | 0.7 | 0.347996 |
Target: 5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3' miRNA: 3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 90401 | 0.66 | 0.566625 |
Target: 5'- cCGGCGcCUGUGCGCgCgcaGcGGCCCCuGUUu -3' miRNA: 3'- -GUUGC-GACACGCG-Gag-C-CCGGGG-CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 89116 | 0.69 | 0.403106 |
Target: 5'- --uCGUUGcagGUGUUUgGGGUCCCGCCg -3' miRNA: 3'- guuGCGACa--CGCGGAgCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 85222 | 0.67 | 0.51963 |
Target: 5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3' miRNA: 3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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