Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 1192 | 1.11 | 0.000446 |
Target: 5'- cCAACGCUGUGCGCCUCGGGCCCCGCCa -3' miRNA: 3'- -GUUGCGACACGCGGAGCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 70385 | 0.74 | 0.205635 |
Target: 5'- gCGGCGCUucgggcugugucGgcgGCGCCUCGGGCgCCCaguggucGCCg -3' miRNA: 3'- -GUUGCGA------------Ca--CGCGGAGCCCG-GGG-------CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 42903 | 0.74 | 0.206126 |
Target: 5'- uCGAgGCUGUGCGCCgcaugccgUGGGCgUCGCa -3' miRNA: 3'- -GUUgCGACACGCGGa-------GCCCGgGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 110503 | 0.73 | 0.231988 |
Target: 5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3' miRNA: 3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 12298 | 0.73 | 0.231988 |
Target: 5'- aAGCGCUGguUGCG-CUCGGGCUCuuccgCGCCg -3' miRNA: 3'- gUUGCGAC--ACGCgGAGCCCGGG-----GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 21836 | 0.71 | 0.285373 |
Target: 5'- cCAACGUUuugaGUGCGCgCUUGGcCUCCGCCu -3' miRNA: 3'- -GUUGCGA----CACGCG-GAGCCcGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 54906 | 0.71 | 0.29187 |
Target: 5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3' miRNA: 3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99752 | 0.71 | 0.319007 |
Target: 5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3' miRNA: 3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 45753 | 0.7 | 0.333271 |
Target: 5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3' miRNA: 3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 79118 | 0.7 | 0.333271 |
Target: 5'- aCGGCGUUGUcggcggcggGCGCCgcggCGGGCUCguuUGCCa -3' miRNA: 3'- -GUUGCGACA---------CGCGGa---GCCCGGG---GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 63618 | 0.7 | 0.340576 |
Target: 5'- uGugGCUGgaaaccaaCGCCUCGcGGCUggCCGCCg -3' miRNA: 3'- gUugCGACac------GCGGAGC-CCGG--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98037 | 0.7 | 0.347996 |
Target: 5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3' miRNA: 3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 13042 | 0.7 | 0.347996 |
Target: 5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3' miRNA: 3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 44159 | 0.7 | 0.355531 |
Target: 5'- -cACGCUGggcacgGCGCCcgUCGGGCUguCCGUg -3' miRNA: 3'- guUGCGACa-----CGCGG--AGCCCGG--GGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98794 | 0.7 | 0.370943 |
Target: 5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3' miRNA: 3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 56625 | 0.69 | 0.378818 |
Target: 5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3' miRNA: 3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 12178 | 0.69 | 0.378818 |
Target: 5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3' miRNA: 3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 19823 | 0.69 | 0.386804 |
Target: 5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3' miRNA: 3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 74182 | 0.69 | 0.394901 |
Target: 5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3' miRNA: 3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 128699 | 0.69 | 0.403106 |
Target: 5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3' miRNA: 3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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