miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 5924 0.67 0.528157
Target:  5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3'
miRNA:   3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 84855 0.68 0.428358
Target:  5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3'
miRNA:   3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 72593 0.68 0.444826
Target:  5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3'
miRNA:   3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5'
6729 3' -62.8 NC_001875.2 + 99342 0.68 0.445703
Target:  5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3'
miRNA:   3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70922 0.67 0.481524
Target:  5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3'
miRNA:   3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 72557 0.67 0.499952
Target:  5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3'
miRNA:   3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5'
6729 3' -62.8 NC_001875.2 + 52448 0.67 0.517742
Target:  5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3'
miRNA:   3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 39068 0.67 0.518686
Target:  5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3'
miRNA:   3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 85222 0.67 0.51963
Target:  5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3'
miRNA:   3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 18297 0.68 0.428358
Target:  5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3'
miRNA:   3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 10393 0.68 0.428358
Target:  5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3'
miRNA:   3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 128699 0.69 0.403106
Target:  5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3'
miRNA:   3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 110503 0.73 0.231988
Target:  5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3'
miRNA:   3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 99752 0.71 0.319007
Target:  5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3'
miRNA:   3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 79118 0.7 0.333271
Target:  5'- aCGGCGUUGUcggcggcggGCGCCgcggCGGGCUCguuUGCCa -3'
miRNA:   3'- -GUUGCGACA---------CGCGGa---GCCCGGG---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 13042 0.7 0.347996
Target:  5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3'
miRNA:   3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98037 0.7 0.347996
Target:  5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3'
miRNA:   3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 98794 0.7 0.370943
Target:  5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3'
miRNA:   3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12178 0.69 0.378818
Target:  5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3'
miRNA:   3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 70204 0.69 0.403106
Target:  5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3'
miRNA:   3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.