miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 1192 1.11 0.000446
Target:  5'- cCAACGCUGUGCGCCUCGGGCCCCGCCa -3'
miRNA:   3'- -GUUGCGACACGCGGAGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 38131 0.68 0.472435
Target:  5'- uCGGCGCUGaGCGCg-CaGGCCgCCGCg -3'
miRNA:   3'- -GUUGCGACaCGCGgaGcCCGG-GGCGg -5'
6729 3' -62.8 NC_001875.2 + 99555 0.67 0.481524
Target:  5'- -uGCGCUGcGCGaCCcgCuGGCgCCGCCg -3'
miRNA:   3'- guUGCGACaCGC-GGa-GcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 40239 0.66 0.595942
Target:  5'- uGGCGCgucaGCGCCgc-GGCCUCGUCg -3'
miRNA:   3'- gUUGCGaca-CGCGGagcCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54906 0.71 0.29187
Target:  5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3'
miRNA:   3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5'
6729 3' -62.8 NC_001875.2 + 45753 0.7 0.333271
Target:  5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3'
miRNA:   3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 44159 0.7 0.355531
Target:  5'- -cACGCUGggcacgGCGCCcgUCGGGCUguCCGUg -3'
miRNA:   3'- guUGCGACa-----CGCGG--AGCCCGG--GGCGg -5'
6729 3' -62.8 NC_001875.2 + 56625 0.69 0.378818
Target:  5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3'
miRNA:   3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 89116 0.69 0.403106
Target:  5'- --uCGUUGcagGUGUUUgGGGUCCCGCCg -3'
miRNA:   3'- guuGCGACa--CGCGGAgCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 112517 0.68 0.472435
Target:  5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3'
miRNA:   3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5'
6729 3' -62.8 NC_001875.2 + 67594 0.68 0.428358
Target:  5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3'
miRNA:   3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 74182 0.69 0.394901
Target:  5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3'
miRNA:   3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70385 0.74 0.205635
Target:  5'- gCGGCGCUucgggcugugucGgcgGCGCCUCGGGCgCCCaguggucGCCg -3'
miRNA:   3'- -GUUGCGA------------Ca--CGCGGAGCCCG-GGG-------CGG- -5'
6729 3' -62.8 NC_001875.2 + 39218 0.68 0.428358
Target:  5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3'
miRNA:   3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12298 0.73 0.231988
Target:  5'- aAGCGCUGguUGCG-CUCGGGCUCuuccgCGCCg -3'
miRNA:   3'- gUUGCGAC--ACGCgGAGCCCGGG-----GCGG- -5'
6729 3' -62.8 NC_001875.2 + 19823 0.69 0.386804
Target:  5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3'
miRNA:   3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5'
6729 3' -62.8 NC_001875.2 + 17085 0.68 0.454521
Target:  5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3'
miRNA:   3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 129332 0.67 0.481524
Target:  5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3'
miRNA:   3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5'
6729 3' -62.8 NC_001875.2 + 21836 0.71 0.285373
Target:  5'- cCAACGUUuugaGUGCGCgCUUGGcCUCCGCCu -3'
miRNA:   3'- -GUUGCGA----CACGCG-GAGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 63618 0.7 0.340576
Target:  5'- uGugGCUGgaaaccaaCGCCUCGcGGCUggCCGCCg -3'
miRNA:   3'- gUugCGACac------GCGGAGC-CCGG--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.