miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 99752 0.71 0.319007
Target:  5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3'
miRNA:   3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 79118 0.7 0.333271
Target:  5'- aCGGCGUUGUcggcggcggGCGCCgcggCGGGCUCguuUGCCa -3'
miRNA:   3'- -GUUGCGACA---------CGCGGa---GCCCGGG---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 13042 0.7 0.347996
Target:  5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3'
miRNA:   3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5'
6729 3' -62.8 NC_001875.2 + 98037 0.7 0.347996
Target:  5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3'
miRNA:   3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 98794 0.7 0.370943
Target:  5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3'
miRNA:   3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12178 0.69 0.378818
Target:  5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3'
miRNA:   3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 70204 0.69 0.403106
Target:  5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3'
miRNA:   3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70922 0.67 0.481524
Target:  5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3'
miRNA:   3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 99342 0.68 0.445703
Target:  5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3'
miRNA:   3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 72593 0.68 0.444826
Target:  5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3'
miRNA:   3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5'
6729 3' -62.8 NC_001875.2 + 84855 0.68 0.428358
Target:  5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3'
miRNA:   3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 18297 0.68 0.428358
Target:  5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3'
miRNA:   3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 10393 0.68 0.428358
Target:  5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3'
miRNA:   3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 128699 0.69 0.403106
Target:  5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3'
miRNA:   3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 45753 0.7 0.333271
Target:  5'- --gUGCUGcGCGCCggagUCGGGC-CCGCUg -3'
miRNA:   3'- guuGCGACaCGCGG----AGCCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54906 0.71 0.29187
Target:  5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3'
miRNA:   3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5'
6729 3' -62.8 NC_001875.2 + 21836 0.71 0.285373
Target:  5'- cCAACGUUuugaGUGCGCgCUUGGcCUCCGCCu -3'
miRNA:   3'- -GUUGCGA----CACGCG-GAGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 12298 0.73 0.231988
Target:  5'- aAGCGCUGguUGCG-CUCGGGCUCuuccgCGCCg -3'
miRNA:   3'- gUUGCGAC--ACGCgGAGCCCGGG-----GCGG- -5'
6729 3' -62.8 NC_001875.2 + 70385 0.74 0.205635
Target:  5'- gCGGCGCUucgggcugugucGgcgGCGCCUCGGGCgCCCaguggucGCCg -3'
miRNA:   3'- -GUUGCGA------------Ca--CGCGGAGCCCG-GGG-------CGG- -5'
6729 3' -62.8 NC_001875.2 + 40239 0.66 0.595942
Target:  5'- uGGCGCgucaGCGCCgc-GGCCUCGUCg -3'
miRNA:   3'- gUUGCGaca-CGCGGagcCCGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.