Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 5' | -56.8 | NC_001875.2 | + | 128890 | 0.7 | 0.581609 |
Target: 5'- cGGGGCGcGGCUCGCGGCGcagaccugGGCGgcGa -3' miRNA: 3'- -UCUUGC-CCGGGCGUCGUua------CCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 128332 | 0.67 | 0.755018 |
Target: 5'- --uAUGGGCCCGCGuGCAAaaGCGUg- -3' miRNA: 3'- ucuUGCCCGGGCGU-CGUUacCGCAac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 113615 | 0.68 | 0.725441 |
Target: 5'- -cGGCGGGCCgCgGCGGCAAgagcGGCGa-- -3' miRNA: 3'- ucUUGCCCGG-G-CGUCGUUa---CCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 105838 | 0.66 | 0.844984 |
Target: 5'- uGGACGGGCgCGguGUgugGGUGGCc--- -3' miRNA: 3'- uCUUGCCCGgGCguCG---UUACCGcaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 90913 | 0.68 | 0.705294 |
Target: 5'- -uGACGGGCaCGCAGCcugcGGUGGUGaUGg -3' miRNA: 3'- ucUUGCCCGgGCGUCG----UUACCGCaAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 85477 | 0.69 | 0.684894 |
Target: 5'- cGGGCGGggcgagagcGCCCGCGGCAAUGcccGCGc-- -3' miRNA: 3'- uCUUGCC---------CGGGCGUCGUUAC---CGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 84315 | 0.68 | 0.714396 |
Target: 5'- uAGuAGCGGcGCCUGCGGUAcccggagcggcgaGUGGCGg-- -3' miRNA: 3'- -UC-UUGCC-CGGGCGUCGU-------------UACCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 79131 | 0.7 | 0.608414 |
Target: 5'- -cGGCGGGCgCCGCGGCGGgcucguuugccacGGCGUg- -3' miRNA: 3'- ucUUGCCCG-GGCGUCGUUa------------CCGCAac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 75640 | 0.66 | 0.819705 |
Target: 5'- ---uUGGcGUCgGCgucGGCGAUGGCGUUGg -3' miRNA: 3'- ucuuGCC-CGGgCG---UCGUUACCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 75518 | 0.66 | 0.844984 |
Target: 5'- -cGAUGGcGUCgGCguuGGUGAUGGCGUUGg -3' miRNA: 3'- ucUUGCC-CGGgCG---UCGUUACCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 75356 | 0.66 | 0.844984 |
Target: 5'- -cGAUGGcGUCgGCguuGGUGAUGGCGUUGg -3' miRNA: 3'- ucUUGCC-CGGgCG---UCGUUACCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 75266 | 0.66 | 0.819705 |
Target: 5'- cGAugGcGGCggCGuCGGCGAUGGCGUc- -3' miRNA: 3'- uCUugC-CCGg-GC-GUCGUUACCGCAac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 72553 | 0.67 | 0.755018 |
Target: 5'- -cAACGGGCgCUGCgGGCGcgGGCGcgGg -3' miRNA: 3'- ucUUGCCCG-GGCG-UCGUuaCCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 62748 | 0.66 | 0.828317 |
Target: 5'- cGAACGGcGCgcugggCCGCGGCucgagccGUGGCGgcGg -3' miRNA: 3'- uCUUGCC-CG------GGCGUCGu------UACCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 50527 | 0.67 | 0.755018 |
Target: 5'- --cGCuGGUCCGCGGuCAGUGGCGc-- -3' miRNA: 3'- ucuUGcCCGGGCGUC-GUUACCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 45872 | 0.66 | 0.819705 |
Target: 5'- uGGACGuGGCCauCGGCAGUGcGCGg-- -3' miRNA: 3'- uCUUGC-CCGGgcGUCGUUAC-CGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 45742 | 0.71 | 0.530865 |
Target: 5'- cGGAGuCGGGCCCGCuGGacuUGGCGgcGa -3' miRNA: 3'- -UCUU-GCCCGGGCG-UCguuACCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 44153 | 0.66 | 0.844984 |
Target: 5'- gGGcACGGcGCCCGUcgGGCuguccGUGGCGg-- -3' miRNA: 3'- -UCuUGCC-CGGGCG--UCGu----UACCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 42045 | 0.7 | 0.633269 |
Target: 5'- --cGCGGGCauggCGCGGCGAcaGGUGUUGg -3' miRNA: 3'- ucuUGCCCGg---GCGUCGUUa-CCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 41017 | 0.71 | 0.571359 |
Target: 5'- cAGGAUGGcGCCCGCGGUgcgcgucuUGGCGa-- -3' miRNA: 3'- -UCUUGCC-CGGGCGUCGuu------ACCGCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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