miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 3' -54 NC_001875.2 + 253 0.69 0.85835
Target:  5'- uGGUgCAUugggCCGgCGGCGGAucgGGCGg -3'
miRNA:   3'- -CCA-GUGua--GGCgGCUGCCUuuaCCGC- -5'
6730 3' -54 NC_001875.2 + 1910 1.12 0.002885
Target:  5'- uGGUCACAUCCGCCGACGGAAAUGGCGg -3'
miRNA:   3'- -CCAGUGUAGGCGGCUGCCUUUACCGC- -5'
6730 3' -54 NC_001875.2 + 1958 1.12 0.002885
Target:  5'- uGGUCACAUCCGCCGACGGAAAUGGCGg -3'
miRNA:   3'- -CCAGUGUAGGCGGCUGCCUUUACCGC- -5'
6730 3' -54 NC_001875.2 + 4494 0.66 0.949131
Target:  5'- aGG-CACAcguugcgucugcUCCGCUG-CGGAAAgcGGCGc -3'
miRNA:   3'- -CCaGUGU------------AGGCGGCuGCCUUUa-CCGC- -5'
6730 3' -54 NC_001875.2 + 5127 0.7 0.825651
Target:  5'- aGGUCACGUCCGCgGACG----UGcGCc -3'
miRNA:   3'- -CCAGUGUAGGCGgCUGCcuuuAC-CGc -5'
6730 3' -54 NC_001875.2 + 7298 0.68 0.880714
Target:  5'- ---gACAUCagaGCCGACGGu--UGGUGg -3'
miRNA:   3'- ccagUGUAGg--CGGCUGCCuuuACCGC- -5'
6730 3' -54 NC_001875.2 + 11137 0.66 0.95327
Target:  5'- -uUCGCGaagugaUUGCCGACGGGGA-GGCGu -3'
miRNA:   3'- ccAGUGUa-----GGCGGCUGCCUUUaCCGC- -5'
6730 3' -54 NC_001875.2 + 14507 0.67 0.940143
Target:  5'- --gCGCuuauUCCGCUGuCGGggGaacuUGGCGg -3'
miRNA:   3'- ccaGUGu---AGGCGGCuGCCuuU----ACCGC- -5'
6730 3' -54 NC_001875.2 + 29099 0.68 0.906743
Target:  5'- --gCACAUugagcggCCgGCCGuugaaGCGGAGGUGGCGg -3'
miRNA:   3'- ccaGUGUA-------GG-CGGC-----UGCCUUUACCGC- -5'
6730 3' -54 NC_001875.2 + 29262 0.68 0.880714
Target:  5'- gGGUgCGCggCCGCCGaccgcgccgGCGGGGcgcggucguGUGGCGu -3'
miRNA:   3'- -CCA-GUGuaGGCGGC---------UGCCUU---------UACCGC- -5'
6730 3' -54 NC_001875.2 + 30197 0.66 0.957175
Target:  5'- uGG-CGcCGUUCGCCgcGACGGccguuGUGGCGa -3'
miRNA:   3'- -CCaGU-GUAGGCGG--CUGCCuu---UACCGC- -5'
6730 3' -54 NC_001875.2 + 36891 0.68 0.880714
Target:  5'- cGG-CACA-CCGCCGGCaGGAAcUGGg- -3'
miRNA:   3'- -CCaGUGUaGGCGGCUG-CCUUuACCgc -5'
6730 3' -54 NC_001875.2 + 40273 0.68 0.880714
Target:  5'- cGGUCGCGuuUCCGUacguggCGGCGGGcaAcgGGCu -3'
miRNA:   3'- -CCAGUGU--AGGCG------GCUGCCU--UuaCCGc -5'
6730 3' -54 NC_001875.2 + 40793 0.72 0.711596
Target:  5'- uGGUCGgGUCCGCCucguaguaggcgaGGCGcGugGUGGCGc -3'
miRNA:   3'- -CCAGUgUAGGCGG-------------CUGC-CuuUACCGC- -5'
6730 3' -54 NC_001875.2 + 41953 0.68 0.907363
Target:  5'- cGG-CGCGcgUGCCGGCGGAAAUcacaagcaugGGCGu -3'
miRNA:   3'- -CCaGUGUagGCGGCUGCCUUUA----------CCGC- -5'
6730 3' -54 NC_001875.2 + 42068 0.72 0.722632
Target:  5'- cGG-CGCGUCCGCgGgccacuauucGCGGgcAUGGCGc -3'
miRNA:   3'- -CCaGUGUAGGCGgC----------UGCCuuUACCGC- -5'
6730 3' -54 NC_001875.2 + 43673 0.71 0.761862
Target:  5'- cGUCACGUCCaCCGACGaccuGGAG-GGCGu -3'
miRNA:   3'- cCAGUGUAGGcGGCUGC----CUUUaCCGC- -5'
6730 3' -54 NC_001875.2 + 43980 0.68 0.900409
Target:  5'- uGGUCGCcgaCCGCC-ACGGAcagcccgAcgGGCGc -3'
miRNA:   3'- -CCAGUGua-GGCGGcUGCCU-------UuaCCGC- -5'
6730 3' -54 NC_001875.2 + 65432 0.68 0.894506
Target:  5'- cGUCcgGCGUgcaCCGCUGGCGGucGGUGGCc -3'
miRNA:   3'- cCAG--UGUA---GGCGGCUGCCu-UUACCGc -5'
6730 3' -54 NC_001875.2 + 66415 0.68 0.894506
Target:  5'- ---gAUGUCCGCCGACGcGGAuaucGGCGc -3'
miRNA:   3'- ccagUGUAGGCGGCUGC-CUUua--CCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.