Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6730 | 3' | -54 | NC_001875.2 | + | 118727 | 0.66 | 0.960851 |
Target: 5'- cGGUUaccugcgaaGCAUCCaGCUG-CGGcacauGGUGGCGg -3' miRNA: 3'- -CCAG---------UGUAGG-CGGCuGCCu----UUACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 111762 | 0.67 | 0.930189 |
Target: 5'- -aUCACGUgCGCCGACGac--UGGUGu -3' miRNA: 3'- ccAGUGUAgGCGGCUGCcuuuACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 14507 | 0.67 | 0.940143 |
Target: 5'- --gCGCuuauUCCGCUGuCGGggGaacuUGGCGg -3' miRNA: 3'- ccaGUGu---AGGCGGCuGCCuuU----ACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 4494 | 0.66 | 0.949131 |
Target: 5'- aGG-CACAcguugcgucugcUCCGCUG-CGGAAAgcGGCGc -3' miRNA: 3'- -CCaGUGU------------AGGCGGCuGCCUUUa-CCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 93243 | 0.66 | 0.949131 |
Target: 5'- uGUCGCGUCCGCCGcucaucagcaACGuGuuuuuguuuGcgGGCGg -3' miRNA: 3'- cCAGUGUAGGCGGC----------UGC-Cu--------UuaCCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 11137 | 0.66 | 0.95327 |
Target: 5'- -uUCGCGaagugaUUGCCGACGGGGA-GGCGu -3' miRNA: 3'- ccAGUGUa-----GGCGGCUGCCUUUaCCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 95355 | 0.66 | 0.95327 |
Target: 5'- cGGcgCACGUgcaCgCGUCGGCGGAAAacGGCGu -3' miRNA: 3'- -CCa-GUGUA---G-GCGGCUGCCUUUa-CCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 126097 | 0.66 | 0.957175 |
Target: 5'- uGUCGCuggCCGCCGA-----AUGGCGg -3' miRNA: 3'- cCAGUGua-GGCGGCUgccuuUACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 30197 | 0.66 | 0.957175 |
Target: 5'- uGG-CGcCGUUCGCCgcGACGGccguuGUGGCGa -3' miRNA: 3'- -CCaGU-GUAGGCGG--CUGCCuu---UACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 43980 | 0.68 | 0.900409 |
Target: 5'- uGGUCGCcgaCCGCC-ACGGAcagcccgAcgGGCGc -3' miRNA: 3'- -CCAGUGua-GGCGGcUGCCU-------UuaCCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 111798 | 0.68 | 0.894506 |
Target: 5'- cGGUgCACG-CgGCCGACGGcgccUGGCu -3' miRNA: 3'- -CCA-GUGUaGgCGGCUGCCuuu-ACCGc -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 65432 | 0.68 | 0.894506 |
Target: 5'- cGUCcgGCGUgcaCCGCUGGCGGucGGUGGCc -3' miRNA: 3'- cCAG--UGUA---GGCGGCUGCCu-UUACCGc -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 98187 | 0.7 | 0.808194 |
Target: 5'- --cCACG-CCGCCGACGGcgucgAGGUGaGCGg -3' miRNA: 3'- ccaGUGUaGGCGGCUGCC-----UUUAC-CGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 5127 | 0.7 | 0.825651 |
Target: 5'- aGGUCACGUCCGCgGACG----UGcGCc -3' miRNA: 3'- -CCAGUGUAGGCGgCUGCcuuuAC-CGc -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 7298 | 0.68 | 0.880714 |
Target: 5'- ---gACAUCagaGCCGACGGu--UGGUGg -3' miRNA: 3'- ccagUGUAGg--CGGCUGCCuuuACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 36891 | 0.68 | 0.880714 |
Target: 5'- cGG-CACA-CCGCCGGCaGGAAcUGGg- -3' miRNA: 3'- -CCaGUGUaGGCGGCUG-CCUUuACCgc -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 29262 | 0.68 | 0.880714 |
Target: 5'- gGGUgCGCggCCGCCGaccgcgccgGCGGGGcgcggucguGUGGCGu -3' miRNA: 3'- -CCA-GUGuaGGCGGC---------UGCCUU---------UACCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 40273 | 0.68 | 0.880714 |
Target: 5'- cGGUCGCGuuUCCGUacguggCGGCGGGcaAcgGGCu -3' miRNA: 3'- -CCAGUGU--AGGCG------GCUGCCU--UuaCCGc -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 66415 | 0.68 | 0.894506 |
Target: 5'- ---gAUGUCCGCCGACGcGGAuaucGGCGc -3' miRNA: 3'- ccagUGUAGGCGGCUGC-CUUua--CCGC- -5' |
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6730 | 3' | -54 | NC_001875.2 | + | 84959 | 0.68 | 0.894506 |
Target: 5'- -aUCACAUCCaCCGugGucaugucaauuGGAGUGGUGg -3' miRNA: 3'- ccAGUGUAGGcGGCugC-----------CUUUACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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