miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 99343 0.68 0.939279
Target:  5'- aGCGuCGUGuccgcgcAACUUGGGCGc-GcCCGCCa -3'
miRNA:   3'- -CGC-GCAU-------UUGGACCUGCaaCuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 98744 0.68 0.934838
Target:  5'- gGUGCGUGcucAGCC-GcGACGgc-GCCGCCa -3'
miRNA:   3'- -CGCGCAU---UUGGaC-CUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 59044 0.68 0.929669
Target:  5'- cGCGCGUucgcGGCCUGcaaACGcUGcuCCGCCg -3'
miRNA:   3'- -CGCGCAu---UUGGACc--UGCaACu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110625 0.68 0.929669
Target:  5'- gGUGCGguuuaaacacAACCUGGugGcgcUGGCCGUg -3'
miRNA:   3'- -CGCGCau--------UUGGACCugCa--ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 16261 0.68 0.929669
Target:  5'- cGCGCGUGcgucACgUGGugccCGgcGACCGCa -3'
miRNA:   3'- -CGCGCAUu---UGgACCu---GCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 96817 0.69 0.924253
Target:  5'- aGCGcCGUcAAgCUGGACGUUauGCgCGCCu -3'
miRNA:   3'- -CGC-GCAuUUgGACCUGCAAc-UG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 110887 0.69 0.924253
Target:  5'- aCGCGUuuGCgCUGGACGgc--CCGCg -3'
miRNA:   3'- cGCGCAuuUG-GACCUGCaacuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 19346 0.69 0.924253
Target:  5'- uGgGCGUGGugCgcGGAgCGUUGGCCGaCg -3'
miRNA:   3'- -CgCGCAUUugGa-CCU-GCAACUGGCgG- -5'
6731 3' -52.6 NC_001875.2 + 70200 0.69 0.924253
Target:  5'- gGCGaCGgcGACCacUGGGCGcccgagGcGCCGCCg -3'
miRNA:   3'- -CGC-GCauUUGG--ACCUGCaa----C-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 40574 0.69 0.924253
Target:  5'- cGCGCGUcAGCCccucGG-UGUUGACCacguccgcGCCa -3'
miRNA:   3'- -CGCGCAuUUGGa---CCuGCAACUGG--------CGG- -5'
6731 3' -52.6 NC_001875.2 + 19157 0.69 0.918587
Target:  5'- aGCGCGUugcGGCCUGcGCGc--ACUGCCg -3'
miRNA:   3'- -CGCGCAu--UUGGACcUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 224 0.69 0.918587
Target:  5'- gGCGCGUca--UUGGuguCGUUcGCCGCCg -3'
miRNA:   3'- -CGCGCAuuugGACCu--GCAAcUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54961 0.69 0.917424
Target:  5'- cGCGCGUuuGCC-GGACGcgucgcucgcgcUGGgCGCCu -3'
miRNA:   3'- -CGCGCAuuUGGaCCUGCa-----------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 99959 0.69 0.912674
Target:  5'- cGCGCugGUGAACCacGGACuGUUGGCCa-- -3'
miRNA:   3'- -CGCG--CAUUUGGa-CCUG-CAACUGGcgg -5'
6731 3' -52.6 NC_001875.2 + 121968 0.69 0.912069
Target:  5'- uGCaGCGUAuucaaaaAGCUggcgGGcACGUUGcCCGCCa -3'
miRNA:   3'- -CG-CGCAU-------UUGGa---CC-UGCAACuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110124 0.69 0.906515
Target:  5'- cGCGCuGUgGAACCUGcuGCGgcugGACCGCa -3'
miRNA:   3'- -CGCG-CA-UUUGGACc-UGCaa--CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 31683 0.69 0.906515
Target:  5'- -aGCGU--GCC-GG-CGUgGACCGCCg -3'
miRNA:   3'- cgCGCAuuUGGaCCuGCAaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 84655 0.69 0.898145
Target:  5'- cCGCGUAGuuuuCCaUGGugGUguaaaacauggaguUGGCCGCg -3'
miRNA:   3'- cGCGCAUUu---GG-ACCugCA--------------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 74122 0.69 0.896155
Target:  5'- gGCGCGUGuucGCCUagagcuggaguucgaGGGCGcgGcgcccGCCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGGA---------------CCUGCaaC-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109862 0.69 0.893469
Target:  5'- cGCGCGUuuGCCaagcUGG-CGcUGgcGCCGCCc -3'
miRNA:   3'- -CGCGCAuuUGG----ACCuGCaAC--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.