miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 36850 0.67 0.960004
Target:  5'- gGC-CGgcGAUCUGGACGauuacguggaggUGACgCGCCc -3'
miRNA:   3'- -CGcGCauUUGGACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 108006 0.67 0.959637
Target:  5'- aGCGCGU--GCUUGGugGggUaccuggucuacucgGGCCGCUu -3'
miRNA:   3'- -CGCGCAuuUGGACCugCa-A--------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 108711 0.67 0.959637
Target:  5'- uGCGCGcAAACCcaaauccUGGACGcguuggaaaaacUGGCgCGCCa -3'
miRNA:   3'- -CGCGCaUUUGG-------ACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 75183 0.67 0.958525
Target:  5'- aGCGCGUAcucguucacGGCCgacGGcuGCGUgccgcauuaccaaucUGACUGCCc -3'
miRNA:   3'- -CGCGCAU---------UUGGa--CC--UGCA---------------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 6676 0.67 0.95701
Target:  5'- aGCGaCGaGGACCggUGGACGgcGGCCaGCg -3'
miRNA:   3'- -CGC-GCaUUUGG--ACCUGCaaCUGG-CGg -5'
6731 3' -52.6 NC_001875.2 + 103065 0.67 0.95701
Target:  5'- cCGCGUAuuUCgagagugGGGCGUguacGGCCGCg -3'
miRNA:   3'- cGCGCAUuuGGa------CCUGCAa---CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 52485 0.67 0.956625
Target:  5'- gGCGCGccgaAAACUU-GACGUUGGCguguaugCGCCa -3'
miRNA:   3'- -CGCGCa---UUUGGAcCUGCAACUG-------GCGG- -5'
6731 3' -52.6 NC_001875.2 + 131537 0.67 0.955457
Target:  5'- aGCGCGguGACCUGcucacacGAagaguuccaagccaCGUUGugCGCCu -3'
miRNA:   3'- -CGCGCauUUGGAC-------CU--------------GCAACugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66683 0.67 0.953057
Target:  5'- aGCGgGaugggAAugCUGcACG-UGACCGCCu -3'
miRNA:   3'- -CGCgCa----UUugGACcUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 32784 0.67 0.953057
Target:  5'- cGCGCG---GCgUGGGCGggcGCCGCg -3'
miRNA:   3'- -CGCGCauuUGgACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 71921 0.67 0.953057
Target:  5'- uGCGCGUcgGCgaGcGCcUUGACCGCg -3'
miRNA:   3'- -CGCGCAuuUGgaCcUGcAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 50129 0.67 0.953057
Target:  5'- cGCGCacGUAGcgcucuuccagcGCCUGGcGCGccuucugcaUGGCCGCCu -3'
miRNA:   3'- -CGCG--CAUU------------UGGACC-UGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42036 0.68 0.948867
Target:  5'- gGCGCGgcGACagguguUGGACGagcagUUGuugcagcucGCCGCCg -3'
miRNA:   3'- -CGCGCauUUGg-----ACCUGC-----AAC---------UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 33456 0.68 0.948867
Target:  5'- aGCGCGgccGGCCagUGGuCGaaagUGGCgCGCCg -3'
miRNA:   3'- -CGCGCau-UUGG--ACCuGCa---ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 117091 0.68 0.948867
Target:  5'- cGCGCGUgugGAugCUcuACGUcauUGugCGCCa -3'
miRNA:   3'- -CGCGCA---UUugGAccUGCA---ACugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66305 0.68 0.944889
Target:  5'- uGCGCGgccggcgaguugauGGCgUGGGCG---GCCGCCg -3'
miRNA:   3'- -CGCGCau------------UUGgACCUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42592 0.68 0.944435
Target:  5'- cGCGCGUcAGCUcGG-CGcUGggcACCGCCa -3'
miRNA:   3'- -CGCGCAuUUGGaCCuGCaAC---UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 78479 0.68 0.93976
Target:  5'- uGCGCGUGuuUUUGGcgcACGUcGugCGCUa -3'
miRNA:   3'- -CGCGCAUuuGGACC---UGCAaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 51892 0.68 0.93976
Target:  5'- cGUGCGU--GCCUGaacGGCGUgaacgaggUGauGCCGCCg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCA--------AC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 47969 0.68 0.93976
Target:  5'- aGCGaCGagGAACCgugcgagcgGGGCGUcGAgCCGCCc -3'
miRNA:   3'- -CGC-GCa-UUUGGa--------CCUGCAaCU-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.