miRNA display CGI


Results 21 - 40 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 61612 0.66 0.973378
Target:  5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3'
miRNA:   3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7715 0.66 0.973378
Target:  5'- uGCuGCGUGAACgCgucGGACaUUGAC-GCCg -3'
miRNA:   3'- -CG-CGCAUUUG-Ga--CCUGcAACUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 74050 0.66 0.973378
Target:  5'- uCGCG-AAACgC-GGuCGUgcggGACCGCCg -3'
miRNA:   3'- cGCGCaUUUG-GaCCuGCAa---CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 68287 0.66 0.970538
Target:  5'- uGCGCGUGAuuGCCUcgccGGAacugGACgCGCUg -3'
miRNA:   3'- -CGCGCAUU--UGGA----CCUgcaaCUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 81478 0.66 0.970538
Target:  5'- cGCGCGgcacgauGACgaGGAgGagGcGCCGCCg -3'
miRNA:   3'- -CGCGCau-----UUGgaCCUgCaaC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 118923 0.66 0.970538
Target:  5'- --uUGUAAACgUcGGGCGUgagcaGGCCGCCc -3'
miRNA:   3'- cgcGCAUUUGgA-CCUGCAa----CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 102520 0.66 0.970538
Target:  5'- uGCGCGccAugCUGGACGa--ACUGCa -3'
miRNA:   3'- -CGCGCauUugGACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 119069 0.66 0.970538
Target:  5'- uGCGCGgcGccccGgCUGGACaacaACCGCCa -3'
miRNA:   3'- -CGCGCauU----UgGACCUGcaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109040 0.66 0.970243
Target:  5'- gGCGCGUcaAGAUugcgucuUUGGugGUUuccagcGCCGCCa -3'
miRNA:   3'- -CGCGCA--UUUG-------GACCugCAAc-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 107771 0.66 0.969645
Target:  5'- uGCGCcauucaagAAGCCUGaacgaggcaauaguGACGUUgaacagccacgcGACCGCCg -3'
miRNA:   3'- -CGCGca------UUUGGAC--------------CUGCAA------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 77502 0.67 0.967488
Target:  5'- gGCGCGU---CCaacGACG-UGACCGUCa -3'
miRNA:   3'- -CGCGCAuuuGGac-CUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 85190 0.67 0.967488
Target:  5'- aGCGaGUAGuaCUGGAUGagccgacgGGCCGCCg -3'
miRNA:   3'- -CGCgCAUUugGACCUGCaa------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 37792 0.67 0.967488
Target:  5'- -gGCGguGACUUGGACGaguccuUUGACgaCGCCa -3'
miRNA:   3'- cgCGCauUUGGACCUGC------AACUG--GCGG- -5'
6731 3' -52.6 NC_001875.2 + 127238 0.67 0.967488
Target:  5'- --aCGacAGCCUGGAUaaGUUGACCGUg -3'
miRNA:   3'- cgcGCauUUGGACCUG--CAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 40294 0.67 0.96422
Target:  5'- cGUGCGgugccAGCCcaUGGAgGUgacGGCCGUCg -3'
miRNA:   3'- -CGCGCau---UUGG--ACCUgCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48497 0.67 0.96422
Target:  5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3'
miRNA:   3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 49830 0.67 0.963881
Target:  5'- aGCGCGUuucgugcAACCaggucgugcucgaUGGGCGccGGCgGCCg -3'
miRNA:   3'- -CGCGCAu------UUGG-------------ACCUGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 454 0.67 0.963881
Target:  5'- aGCGCGgacgaggugcUGGACCUGGccagcauGCGgcGAC-GCCa -3'
miRNA:   3'- -CGCGC----------AUUUGGACC-------UGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 9398 0.67 0.963196
Target:  5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3'
miRNA:   3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 88173 0.67 0.960729
Target:  5'- cGgGCGUuuGCgC-GGGCGUUGGCUGgCu -3'
miRNA:   3'- -CgCGCAuuUG-GaCCUGCAACUGGCgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.