miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5'
6731 3' -52.6 NC_001875.2 + 128758 0.72 0.778139
Target:  5'- gGCGCGUGcacGCCgUGGGCGaccccGGCgCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGG-ACCUGCaa---CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 114191 0.71 0.823602
Target:  5'- cCGCGUGcuaccAUCUGGACcgcgcGGCCGCCa -3'
miRNA:   3'- cGCGCAUu----UGGACCUGcaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 117344 0.71 0.823602
Target:  5'- gGCGCGggcGAACCggcGGGCcggcUGGCCGUCg -3'
miRNA:   3'- -CGCGCa--UUUGGa--CCUGca--ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 27323 0.71 0.832187
Target:  5'- uGCGCGUGcaaaAGCC-GGACGgcGuuUCGCCg -3'
miRNA:   3'- -CGCGCAU----UUGGaCCUGCaaCu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 65607 0.71 0.832187
Target:  5'- aCGUGUucGACCUGGcCaccGACCGCCa -3'
miRNA:   3'- cGCGCAu-UUGGACCuGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 38109 0.71 0.840583
Target:  5'- cCGCGUGAACacccguCUGGugGUUuuuaauaacGugCGCCu -3'
miRNA:   3'- cGCGCAUUUG------GACCugCAA---------CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 100591 0.71 0.840583
Target:  5'- aCGCGUAcgcgGGCC-GGGCGccGGCCGCg -3'
miRNA:   3'- cGCGCAU----UUGGaCCUGCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 105579 0.71 0.840583
Target:  5'- gGCGCGUGuacauCUUGG-CGgugGACaCGCCg -3'
miRNA:   3'- -CGCGCAUuu---GGACCuGCaa-CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 10648 0.71 0.840583
Target:  5'- -aGCGUGcaguACUUGGGCGgcgGACUGCa -3'
miRNA:   3'- cgCGCAUu---UGGACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 76198 0.71 0.847159
Target:  5'- cGCGCGgcaagacacucaGGAUCUGGAgG--GGCCGCCg -3'
miRNA:   3'- -CGCGCa-----------UUUGGACCUgCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 11966 0.7 0.856778
Target:  5'- gGCGCGUugcaAAGCaCUGGcgacgGCGUUGGgCGCg -3'
miRNA:   3'- -CGCGCA----UUUG-GACC-----UGCAACUgGCGg -5'
6731 3' -52.6 NC_001875.2 + 110260 0.7 0.856778
Target:  5'- aGCGCGUucuuGCuCUGGccGCGcgUGGCgGCCu -3'
miRNA:   3'- -CGCGCAuu--UG-GACC--UGCa-ACUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 131652 0.7 0.856778
Target:  5'- cGCGCGccgcagacUGucGAUCUGcACGUUGGCCGCg -3'
miRNA:   3'- -CGCGC--------AU--UUGGACcUGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 26088 0.7 0.859917
Target:  5'- gGCGCGgcGGCCaccacgaaaaacucGGGCaUUGGCCGCUu -3'
miRNA:   3'- -CGCGCauUUGGa-------------CCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 43320 0.7 0.864562
Target:  5'- cGCGCGcGggUCgGcGugGUUG-CCGCCg -3'
miRNA:   3'- -CGCGCaUuuGGaC-CugCAACuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7012 0.7 0.864562
Target:  5'- gGCGCGccaguugCUGGACGUaagcgaggUGGCCGCg -3'
miRNA:   3'- -CGCGCauuug--GACCUGCA--------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 59563 0.7 0.877293
Target:  5'- gGCGC----GCCUGGcuucguucaauugcAUGUUGACCGCg -3'
miRNA:   3'- -CGCGcauuUGGACC--------------UGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 74428 0.7 0.879472
Target:  5'- cGCGCGUAAACCggcGcGGCGUcGcGCUGUCc -3'
miRNA:   3'- -CGCGCAUUUGGa--C-CUGCAaC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7146 0.7 0.885886
Target:  5'- gGCGCGUuggccgaaGGGCCaacaucuuugcgcUGGACGc-GAUCGCCg -3'
miRNA:   3'- -CGCGCA--------UUUGG-------------ACCUGCaaCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.