miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 5351 1.15 0.002481
Target:  5'- gGCGCGUAAACCUGGACGUUGACCGCCa -3'
miRNA:   3'- -CGCGCAUUUGGACCUGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 18198 0.79 0.409887
Target:  5'- cGgGCGUAGGCgUGGugGUUGcccaAUCGCCg -3'
miRNA:   3'- -CgCGCAUUUGgACCugCAAC----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66010 0.77 0.500623
Target:  5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3'
miRNA:   3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 11086 0.77 0.533499
Target:  5'- cGCGCGc---CCUGGACac-GGCCGCCg -3'
miRNA:   3'- -CGCGCauuuGGACCUGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 104703 0.76 0.564032
Target:  5'- uCGC-UAAGgCUGGugGUgUGGCCGCCa -3'
miRNA:   3'- cGCGcAUUUgGACCugCA-ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128878 0.76 0.574316
Target:  5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3'
miRNA:   3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110072 0.76 0.595007
Target:  5'- cGCGCGcagAGACgCUGcGCGUggaGGCCGCCa -3'
miRNA:   3'- -CGCGCa--UUUG-GACcUGCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48197 0.75 0.61581
Target:  5'- cGCGCGcccucguGCCugUGGGCGgcggccacgUGGCCGCCa -3'
miRNA:   3'- -CGCGCauu----UGG--ACCUGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 19643 0.75 0.630406
Target:  5'- aGCGCGUAGACCccaacgaugcccUGGcgugcccaggaccacAgCGUUGACUGCCu -3'
miRNA:   3'- -CGCGCAUUUGG------------ACC---------------U-GCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 50020 0.75 0.647089
Target:  5'- cGCGCGUGGucGCC-GGGCGgcgaGGCgGCCg -3'
miRNA:   3'- -CGCGCAUU--UGGaCCUGCaa--CUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 94787 0.74 0.678257
Target:  5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3'
miRNA:   3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 114964 0.73 0.708051
Target:  5'- uGCGCGUAcgcauacAACCagGGGCGUacacGugCGCCc -3'
miRNA:   3'- -CGCGCAU-------UUGGa-CCUGCAa---CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 41988 0.73 0.729289
Target:  5'- gGCGCGgcAA-CUGGACGcgcaacUGGCCGCg -3'
miRNA:   3'- -CGCGCauUUgGACCUGCa-----ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 7106 0.73 0.739272
Target:  5'- cGCGCGcuGGCC--GACaUUGACCGCCa -3'
miRNA:   3'- -CGCGCauUUGGacCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 125080 0.73 0.739272
Target:  5'- cGUGCGcucGGCCgaGGGCGUgGACCGCg -3'
miRNA:   3'- -CGCGCau-UUGGa-CCUGCAaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 41028 0.73 0.739272
Target:  5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3'
miRNA:   3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 42726 0.73 0.749159
Target:  5'- cGCGCGUGcgccGACCUGGcGCGgcugGGCgCGaCCa -3'
miRNA:   3'- -CGCGCAU----UUGGACC-UGCaa--CUG-GC-GG- -5'
6731 3' -52.6 NC_001875.2 + 54734 0.73 0.758938
Target:  5'- gGCGCGcc-GCC-GGGCGaagcGGCCGCCg -3'
miRNA:   3'- -CGCGCauuUGGaCCUGCaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 21335 0.73 0.762818
Target:  5'- cCGCGgccACCUGGGCGacgugcuugaacagaUgGGCCGCCa -3'
miRNA:   3'- cGCGCauuUGGACCUGC---------------AaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.