miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 100886 0.66 0.980705
Target:  5'- aCGCGUAAGCCgguccGGGC----GCCGCa -3'
miRNA:   3'- cGCGCAUUUGGa----CCUGcaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 70450 0.66 0.978454
Target:  5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3'
miRNA:   3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128962 0.66 0.976014
Target:  5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3'
miRNA:   3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 61612 0.66 0.973378
Target:  5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3'
miRNA:   3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 44890 0.66 0.973378
Target:  5'- uGCGCc---GCUUGGACGcUGGCgcuCGCCc -3'
miRNA:   3'- -CGCGcauuUGGACCUGCaACUG---GCGG- -5'
6731 3' -52.6 NC_001875.2 + 107771 0.66 0.969645
Target:  5'- uGCGCcauucaagAAGCCUGaacgaggcaauaguGACGUUgaacagccacgcGACCGCCg -3'
miRNA:   3'- -CGCGca------UUUGGAC--------------CUGCAA------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54358 0.66 0.973378
Target:  5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3'
miRNA:   3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7715 0.66 0.973378
Target:  5'- uGCuGCGUGAACgCgucGGACaUUGAC-GCCg -3'
miRNA:   3'- -CG-CGCAUUUG-Ga--CCUGcAACUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 119069 0.66 0.970538
Target:  5'- uGCGCGgcGccccGgCUGGACaacaACCGCCa -3'
miRNA:   3'- -CGCGCauU----UgGACCUGcaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29701 0.66 0.979376
Target:  5'- uGCGCGagaaccgGAACUgcagauacuaaucauUGGcAUGUUGGCCaGCCu -3'
miRNA:   3'- -CGCGCa------UUUGG---------------ACC-UGCAACUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 39334 0.66 0.980488
Target:  5'- cGCGCGcUGcaggcgcAGCCU-GACGcUGAcgcCCGCCg -3'
miRNA:   3'- -CGCGC-AU-------UUGGAcCUGCaACU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 81478 0.66 0.970538
Target:  5'- cGCGCGgcacgauGACgaGGAgGagGcGCCGCCg -3'
miRNA:   3'- -CGCGCau-----UUGgaCCUgCaaC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109040 0.66 0.970243
Target:  5'- gGCGCGUcaAGAUugcgucuUUGGugGUUuccagcGCCGCCa -3'
miRNA:   3'- -CGCGCA--UUUG-------GACCugCAAc-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 68287 0.66 0.970538
Target:  5'- uGCGCGUGAuuGCCUcgccGGAacugGACgCGCUg -3'
miRNA:   3'- -CGCGCAUU--UGGA----CCUgcaaCUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 58954 0.66 0.980705
Target:  5'- aGCuuGUucGACUgaGGcCGUUGGCCGCCc -3'
miRNA:   3'- -CGcgCAu-UUGGa-CCuGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 102520 0.66 0.970538
Target:  5'- uGCGCGccAugCUGGACGa--ACUGCa -3'
miRNA:   3'- -CGCGCauUugGACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 118923 0.66 0.970538
Target:  5'- --uUGUAAACgUcGGGCGUgagcaGGCCGCCc -3'
miRNA:   3'- cgcGCAUUUGgA-CCUGCAa----CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 74050 0.66 0.973378
Target:  5'- uCGCG-AAACgC-GGuCGUgcggGACCGCCg -3'
miRNA:   3'- cGCGCaUUUG-GaCCuGCAa---CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29990 0.66 0.973378
Target:  5'- uGCGCGgcGGCggUGGAcugcagcgugcCGUUGACCcaugcGCCg -3'
miRNA:   3'- -CGCGCauUUGg-ACCU-----------GCAACUGG-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.