miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 109862 0.69 0.893469
Target:  5'- cGCGCGUuuGCCaagcUGG-CGcUGgcGCCGCCc -3'
miRNA:   3'- -CGCGCAuuUGG----ACCuGCaAC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 10648 0.71 0.840583
Target:  5'- -aGCGUGcaguACUUGGGCGgcgGACUGCa -3'
miRNA:   3'- cgCGCAUu---UGGACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 105579 0.71 0.840583
Target:  5'- gGCGCGUGuacauCUUGG-CGgugGACaCGCCg -3'
miRNA:   3'- -CGCGCAUuu---GGACCuGCaa-CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 100591 0.71 0.840583
Target:  5'- aCGCGUAcgcgGGCC-GGGCGccGGCCGCg -3'
miRNA:   3'- cGCGCAU----UUGGaCCUGCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 11966 0.7 0.856778
Target:  5'- gGCGCGUugcaAAGCaCUGGcgacgGCGUUGGgCGCg -3'
miRNA:   3'- -CGCGCA----UUUG-GACC-----UGCAACUgGCGg -5'
6731 3' -52.6 NC_001875.2 + 7012 0.7 0.864562
Target:  5'- gGCGCGccaguugCUGGACGUaagcgaggUGGCCGCg -3'
miRNA:   3'- -CGCGCauuug--GACCUGCA--------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 43320 0.7 0.864562
Target:  5'- cGCGCGcGggUCgGcGugGUUG-CCGCCg -3'
miRNA:   3'- -CGCGCaUuuGGaC-CugCAACuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7146 0.7 0.885886
Target:  5'- gGCGCGUuggccgaaGGGCCaacaucuuugcgcUGGACGc-GAUCGCCg -3'
miRNA:   3'- -CGCGCA--------UUUGG-------------ACCUGCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 12601 0.7 0.886587
Target:  5'- -aGCGUAGACCcaacuGAUGUUGG-CGCCa -3'
miRNA:   3'- cgCGCAUUUGGac---CUGCAACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 27323 0.71 0.832187
Target:  5'- uGCGCGUGcaaaAGCC-GGACGgcGuuUCGCCg -3'
miRNA:   3'- -CGCGCAU----UUGGaCCUGCaaCu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 117344 0.71 0.823602
Target:  5'- gGCGCGggcGAACCggcGGGCcggcUGGCCGUCg -3'
miRNA:   3'- -CGCGCa--UUUGGa--CCUGca--ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128758 0.72 0.778139
Target:  5'- gGCGCGUGcacGCCgUGGGCGaccccGGCgCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGG-ACCUGCaa---CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 11086 0.77 0.533499
Target:  5'- cGCGCGc---CCUGGACac-GGCCGCCg -3'
miRNA:   3'- -CGCGCauuuGGACCUGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 104703 0.76 0.564032
Target:  5'- uCGC-UAAGgCUGGugGUgUGGCCGCCa -3'
miRNA:   3'- cGCGcAUUUgGACCugCA-ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110072 0.76 0.595007
Target:  5'- cGCGCGcagAGACgCUGcGCGUggaGGCCGCCa -3'
miRNA:   3'- -CGCGCa--UUUG-GACcUGCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 19643 0.75 0.630406
Target:  5'- aGCGCGUAGACCccaacgaugcccUGGcgugcccaggaccacAgCGUUGACUGCCu -3'
miRNA:   3'- -CGCGCAUUUGG------------ACC---------------U-GCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 50020 0.75 0.647089
Target:  5'- cGCGCGUGGucGCC-GGGCGgcgaGGCgGCCg -3'
miRNA:   3'- -CGCGCAUU--UGGaCCUGCaa--CUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 114964 0.73 0.708051
Target:  5'- uGCGCGUAcgcauacAACCagGGGCGUacacGugCGCCc -3'
miRNA:   3'- -CGCGCAU-------UUGGa-CCUGCAa---CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7106 0.73 0.739272
Target:  5'- cGCGCGcuGGCC--GACaUUGACCGCCa -3'
miRNA:   3'- -CGCGCauUUGGacCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 21335 0.73 0.762818
Target:  5'- cCGCGgccACCUGGGCGacgugcuugaacagaUgGGCCGCCa -3'
miRNA:   3'- cGCGCauuUGGACCUGC---------------AaCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.