miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 5351 1.15 0.002481
Target:  5'- gGCGCGUAAACCUGGACGUUGACCGCCa -3'
miRNA:   3'- -CGCGCAUUUGGACCUGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 131652 0.7 0.856778
Target:  5'- cGCGCGccgcagacUGucGAUCUGcACGUUGGCCGCg -3'
miRNA:   3'- -CGCGC--------AU--UUGGACcUGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 59563 0.7 0.877293
Target:  5'- gGCGC----GCCUGGcuucguucaauugcAUGUUGACCGCg -3'
miRNA:   3'- -CGCGcauuUGGACC--------------UGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 94787 0.74 0.678257
Target:  5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3'
miRNA:   3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 41988 0.73 0.729289
Target:  5'- gGCGCGgcAA-CUGGACGcgcaacUGGCCGCg -3'
miRNA:   3'- -CGCGCauUUgGACCUGCa-----ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 41028 0.73 0.739272
Target:  5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3'
miRNA:   3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 42726 0.73 0.749159
Target:  5'- cGCGCGUGcgccGACCUGGcGCGgcugGGCgCGaCCa -3'
miRNA:   3'- -CGCGCAU----UUGGACC-UGCaa--CUG-GC-GG- -5'
6731 3' -52.6 NC_001875.2 + 27261 0.72 0.768602
Target:  5'- uGUGCGUGAACg-GGACGggcgUGGgCGUCg -3'
miRNA:   3'- -CGCGCAUUUGgaCCUGCa---ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110260 0.7 0.856778
Target:  5'- aGCGCGUucuuGCuCUGGccGCGcgUGGCgGCCu -3'
miRNA:   3'- -CGCGCAuu--UG-GACC--UGCa-ACUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 65607 0.71 0.832187
Target:  5'- aCGUGUucGACCUGGcCaccGACCGCCa -3'
miRNA:   3'- cGCGCAu-UUGGACCuGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5'
6731 3' -52.6 NC_001875.2 + 66010 0.77 0.500623
Target:  5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3'
miRNA:   3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 38109 0.71 0.840583
Target:  5'- cCGCGUGAACacccguCUGGugGUUuuuaauaacGugCGCCu -3'
miRNA:   3'- cGCGCAUUUG------GACCugCAA---------CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128878 0.76 0.574316
Target:  5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3'
miRNA:   3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54734 0.73 0.758938
Target:  5'- gGCGCGcc-GCC-GGGCGaagcGGCCGCCg -3'
miRNA:   3'- -CGCGCauuUGGaCCUGCaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 76198 0.71 0.847159
Target:  5'- cGCGCGgcaagacacucaGGAUCUGGAgG--GGCCGCCg -3'
miRNA:   3'- -CGCGCa-----------UUUGGACCUgCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 26088 0.7 0.859917
Target:  5'- gGCGCGgcGGCCaccacgaaaaacucGGGCaUUGGCCGCUu -3'
miRNA:   3'- -CGCGCauUUGGa-------------CCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48197 0.75 0.61581
Target:  5'- cGCGCGcccucguGCCugUGGGCGgcggccacgUGGCCGCCa -3'
miRNA:   3'- -CGCGCauu----UGG--ACCUGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 125080 0.73 0.739272
Target:  5'- cGUGCGcucGGCCgaGGGCGUgGACCGCg -3'
miRNA:   3'- -CGCGCau-UUGGa-CCUGCAaCUGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.