miRNA display CGI


Results 1 - 20 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 224 0.69 0.918587
Target:  5'- gGCGCGUca--UUGGuguCGUUcGCCGCCg -3'
miRNA:   3'- -CGCGCAuuugGACCu--GCAAcUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 454 0.67 0.963881
Target:  5'- aGCGCGgacgaggugcUGGACCUGGccagcauGCGgcGAC-GCCa -3'
miRNA:   3'- -CGCGC----------AUUUGGACC-------UGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 5351 1.15 0.002481
Target:  5'- gGCGCGUAAACCUGGACGUUGACCGCCa -3'
miRNA:   3'- -CGCGCAUUUGGACCUGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 6676 0.67 0.95701
Target:  5'- aGCGaCGaGGACCggUGGACGgcGGCCaGCg -3'
miRNA:   3'- -CGC-GCaUUUGG--ACCUGCaaCUGG-CGg -5'
6731 3' -52.6 NC_001875.2 + 7012 0.7 0.864562
Target:  5'- gGCGCGccaguugCUGGACGUaagcgaggUGGCCGCg -3'
miRNA:   3'- -CGCGCauuug--GACCUGCA--------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 7106 0.73 0.739272
Target:  5'- cGCGCGcuGGCC--GACaUUGACCGCCa -3'
miRNA:   3'- -CGCGCauUUGGacCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7146 0.7 0.885886
Target:  5'- gGCGCGUuggccgaaGGGCCaacaucuuugcgcUGGACGc-GAUCGCCg -3'
miRNA:   3'- -CGCGCA--------UUUGG-------------ACCUGCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 7715 0.66 0.973378
Target:  5'- uGCuGCGUGAACgCgucGGACaUUGAC-GCCg -3'
miRNA:   3'- -CG-CGCAUUUG-Ga--CCUGcAACUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 9398 0.67 0.963196
Target:  5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3'
miRNA:   3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 9418 0.7 0.886587
Target:  5'- cGCGCGaGGACCUGGuauuGCGUU-ACUgGCCc -3'
miRNA:   3'- -CGCGCaUUUGGACC----UGCAAcUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 10648 0.71 0.840583
Target:  5'- -aGCGUGcaguACUUGGGCGgcgGACUGCa -3'
miRNA:   3'- cgCGCAUu---UGGACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 11086 0.77 0.533499
Target:  5'- cGCGCGc---CCUGGACac-GGCCGCCg -3'
miRNA:   3'- -CGCGCauuuGGACCUGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 11966 0.7 0.856778
Target:  5'- gGCGCGUugcaAAGCaCUGGcgacgGCGUUGGgCGCg -3'
miRNA:   3'- -CGCGCA----UUUG-GACC-----UGCAACUgGCGg -5'
6731 3' -52.6 NC_001875.2 + 12601 0.7 0.886587
Target:  5'- -aGCGUAGACCcaacuGAUGUUGG-CGCCa -3'
miRNA:   3'- cgCGCAUUUGGac---CUGCAACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 16261 0.68 0.929669
Target:  5'- cGCGCGUGcgucACgUGGugccCGgcGACCGCa -3'
miRNA:   3'- -CGCGCAUu---UGgACCu---GCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 18198 0.79 0.409887
Target:  5'- cGgGCGUAGGCgUGGugGUUGcccaAUCGCCg -3'
miRNA:   3'- -CgCGCAUUUGgACCugCAAC----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 19157 0.69 0.918587
Target:  5'- aGCGCGUugcGGCCUGcGCGc--ACUGCCg -3'
miRNA:   3'- -CGCGCAu--UUGGACcUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 19346 0.69 0.924253
Target:  5'- uGgGCGUGGugCgcGGAgCGUUGGCCGaCg -3'
miRNA:   3'- -CgCGCAUUugGa-CCU-GCAACUGGCgG- -5'
6731 3' -52.6 NC_001875.2 + 19643 0.75 0.630406
Target:  5'- aGCGCGUAGACCccaacgaugcccUGGcgugcccaggaccacAgCGUUGACUGCCu -3'
miRNA:   3'- -CGCGCAUUUGG------------ACC---------------U-GCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 21335 0.73 0.762818
Target:  5'- cCGCGgccACCUGGGCGacgugcuugaacagaUgGGCCGCCa -3'
miRNA:   3'- cGCGCauuUGGACCUGC---------------AaCUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.