miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 21405 0.7 0.886587
Target:  5'- cGCGCGcgcGCCUGGACcagcuUCGCCa -3'
miRNA:   3'- -CGCGCauuUGGACCUGcaacuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 23832 0.66 0.978454
Target:  5'- cCGC---AGCCUGGuCGUgcacacgGACCGCg -3'
miRNA:   3'- cGCGcauUUGGACCuGCAa------CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 23938 0.66 0.980705
Target:  5'- aCGuCGgcGACCUGGGCaacGugCGCUc -3'
miRNA:   3'- cGC-GCauUUGGACCUGcaaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 26088 0.7 0.859917
Target:  5'- gGCGCGgcGGCCaccacgaaaaacucGGGCaUUGGCCGCUu -3'
miRNA:   3'- -CGCGCauUUGGa-------------CCUGcAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 27261 0.72 0.768602
Target:  5'- uGUGCGUGAACg-GGACGggcgUGGgCGUCg -3'
miRNA:   3'- -CGCGCAUUUGgaCCUGCa---ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 27323 0.71 0.832187
Target:  5'- uGCGCGUGcaaaAGCC-GGACGgcGuuUCGCCg -3'
miRNA:   3'- -CGCGCAU----UUGGaCCUGCaaCu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29701 0.66 0.979376
Target:  5'- uGCGCGagaaccgGAACUgcagauacuaaucauUGGcAUGUUGGCCaGCCu -3'
miRNA:   3'- -CGCGCa------UUUGG---------------ACC-UGCAACUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 29990 0.66 0.973378
Target:  5'- uGCGCGgcGGCggUGGAcugcagcgugcCGUUGACCcaugcGCCg -3'
miRNA:   3'- -CGCGCauUUGg-ACCU-----------GCAACUGG-----CGG- -5'
6731 3' -52.6 NC_001875.2 + 31485 0.66 0.978454
Target:  5'- aGCGCGgcGGCaaauuuuUGUUGcACCGCCa -3'
miRNA:   3'- -CGCGCauUUGgaccu--GCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 31683 0.69 0.906515
Target:  5'- -aGCGU--GCC-GG-CGUgGACCGCCg -3'
miRNA:   3'- cgCGCAuuUGGaCCuGCAaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 32784 0.67 0.953057
Target:  5'- cGCGCG---GCgUGGGCGggcGCCGCg -3'
miRNA:   3'- -CGCGCauuUGgACCUGCaacUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 33456 0.68 0.948867
Target:  5'- aGCGCGgccGGCCagUGGuCGaaagUGGCgCGCCg -3'
miRNA:   3'- -CGCGCau-UUGG--ACCuGCa---ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 34456 0.66 0.978454
Target:  5'- gGCGCGUuugguGGCCaUGGcUGUcgGGCUGUCa -3'
miRNA:   3'- -CGCGCAu----UUGG-ACCuGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 36850 0.67 0.960004
Target:  5'- gGC-CGgcGAUCUGGACGauuacguggaggUGACgCGCCc -3'
miRNA:   3'- -CGcGCauUUGGACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 37416 0.66 0.980705
Target:  5'- gGCGCGUGgaagaGGCCgUGGcGCaGUcGGCgGCCa -3'
miRNA:   3'- -CGCGCAU-----UUGG-ACC-UG-CAaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 37792 0.67 0.967488
Target:  5'- -gGCGguGACUUGGACGaguccuUUGACgaCGCCa -3'
miRNA:   3'- cgCGCauUUGGACCUGC------AACUG--GCGG- -5'
6731 3' -52.6 NC_001875.2 + 38109 0.71 0.840583
Target:  5'- cCGCGUGAACacccguCUGGugGUUuuuaauaacGugCGCCu -3'
miRNA:   3'- cGCGCAUUUG------GACCugCAA---------CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 39334 0.66 0.980488
Target:  5'- cGCGCGcUGcaggcgcAGCCU-GACGcUGAcgcCCGCCg -3'
miRNA:   3'- -CGCGC-AU-------UUGGAcCUGCaACU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 40294 0.67 0.96422
Target:  5'- cGUGCGgugccAGCCcaUGGAgGUgacGGCCGUCg -3'
miRNA:   3'- -CGCGCau---UUGG--ACCUgCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 40574 0.69 0.924253
Target:  5'- cGCGCGUcAGCCccucGG-UGUUGACCacguccgcGCCa -3'
miRNA:   3'- -CGCGCAuUUGGa---CCuGCAACUGG--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.