miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 131652 0.7 0.856778
Target:  5'- cGCGCGccgcagacUGucGAUCUGcACGUUGGCCGCg -3'
miRNA:   3'- -CGCGC--------AU--UUGGACcUGCAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 131537 0.67 0.955457
Target:  5'- aGCGCGguGACCUGcucacacGAagaguuccaagccaCGUUGugCGCCu -3'
miRNA:   3'- -CGCGCauUUGGAC-------CU--------------GCAACugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128962 0.66 0.976014
Target:  5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3'
miRNA:   3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 128878 0.76 0.574316
Target:  5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3'
miRNA:   3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128758 0.72 0.778139
Target:  5'- gGCGCGUGcacGCCgUGGGCGaccccGGCgCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGG-ACCUGCaa---CUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 127238 0.67 0.967488
Target:  5'- --aCGacAGCCUGGAUaaGUUGACCGUg -3'
miRNA:   3'- cgcGCauUUGGACCUG--CAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 125333 0.66 0.978454
Target:  5'- cGCGC---AAUCUGGGCaacGGCCGCUu -3'
miRNA:   3'- -CGCGcauUUGGACCUGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 125080 0.73 0.739272
Target:  5'- cGUGCGcucGGCCgaGGGCGUgGACCGCg -3'
miRNA:   3'- -CGCGCau-UUGGa-CCUGCAaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 122269 0.66 0.980488
Target:  5'- cGCGCccgAAGCgUGGcACGUguUGAgcguccaCCGCCg -3'
miRNA:   3'- -CGCGca-UUUGgACC-UGCA--ACU-------GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 121968 0.69 0.912069
Target:  5'- uGCaGCGUAuucaaaaAGCUggcgGGcACGUUGcCCGCCa -3'
miRNA:   3'- -CG-CGCAU-------UUGGa---CC-UGCAACuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 119069 0.66 0.970538
Target:  5'- uGCGCGgcGccccGgCUGGACaacaACCGCCa -3'
miRNA:   3'- -CGCGCauU----UgGACCUGcaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 118923 0.66 0.970538
Target:  5'- --uUGUAAACgUcGGGCGUgagcaGGCCGCCc -3'
miRNA:   3'- cgcGCAUUUGgA-CCUGCAa----CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 117344 0.71 0.823602
Target:  5'- gGCGCGggcGAACCggcGGGCcggcUGGCCGUCg -3'
miRNA:   3'- -CGCGCa--UUUGGa--CCUGca--ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 117091 0.68 0.948867
Target:  5'- cGCGCGUgugGAugCUcuACGUcauUGugCGCCa -3'
miRNA:   3'- -CGCGCA---UUugGAccUGCA---ACugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 114964 0.73 0.708051
Target:  5'- uGCGCGUAcgcauacAACCagGGGCGUacacGugCGCCc -3'
miRNA:   3'- -CGCGCAU-------UUGGa-CCUGCAa---CugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 114191 0.71 0.823602
Target:  5'- cCGCGUGcuaccAUCUGGACcgcgcGGCCGCCa -3'
miRNA:   3'- cGCGCAUu----UGGACCUGcaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5'
6731 3' -52.6 NC_001875.2 + 110887 0.69 0.924253
Target:  5'- aCGCGUuuGCgCUGGACGgc--CCGCg -3'
miRNA:   3'- cGCGCAuuUG-GACCUGCaacuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 110625 0.68 0.929669
Target:  5'- gGUGCGguuuaaacacAACCUGGugGcgcUGGCCGUg -3'
miRNA:   3'- -CGCGCau--------UUGGACCugCa--ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 110260 0.7 0.856778
Target:  5'- aGCGCGUucuuGCuCUGGccGCGcgUGGCgGCCu -3'
miRNA:   3'- -CGCGCAuu--UG-GACC--UGCa-ACUGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.