miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 40954 0.66 0.976014
Target:  5'- cUGUGUGGAUgUGGugGUgcugGGCaCGCg -3'
miRNA:   3'- cGCGCAUUUGgACCugCAa---CUG-GCGg -5'
6731 3' -52.6 NC_001875.2 + 41028 0.73 0.739272
Target:  5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3'
miRNA:   3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 41988 0.73 0.729289
Target:  5'- gGCGCGgcAA-CUGGACGcgcaacUGGCCGCg -3'
miRNA:   3'- -CGCGCauUUgGACCUGCa-----ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 42036 0.68 0.948867
Target:  5'- gGCGCGgcGACagguguUGGACGagcagUUGuugcagcucGCCGCCg -3'
miRNA:   3'- -CGCGCauUUGg-----ACCUGC-----AAC---------UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42592 0.68 0.944435
Target:  5'- cGCGCGUcAGCUcGG-CGcUGggcACCGCCa -3'
miRNA:   3'- -CGCGCAuUUGGaCCuGCaAC---UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42726 0.73 0.749159
Target:  5'- cGCGCGUGcgccGACCUGGcGCGgcugGGCgCGaCCa -3'
miRNA:   3'- -CGCGCAU----UUGGACC-UGCaa--CUG-GC-GG- -5'
6731 3' -52.6 NC_001875.2 + 43320 0.7 0.864562
Target:  5'- cGCGCGcGggUCgGcGugGUUG-CCGCCg -3'
miRNA:   3'- -CGCGCaUuuGGaC-CugCAACuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 44890 0.66 0.973378
Target:  5'- uGCGCc---GCUUGGACGcUGGCgcuCGCCc -3'
miRNA:   3'- -CGCGcauuUGGACCUGCaACUG---GCGG- -5'
6731 3' -52.6 NC_001875.2 + 47969 0.68 0.93976
Target:  5'- aGCGaCGagGAACCgugcgagcgGGGCGUcGAgCCGCCc -3'
miRNA:   3'- -CGC-GCa-UUUGGa--------CCUGCAaCU-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48197 0.75 0.61581
Target:  5'- cGCGCGcccucguGCCugUGGGCGgcggccacgUGGCCGCCa -3'
miRNA:   3'- -CGCGCauu----UGG--ACCUGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48497 0.67 0.96422
Target:  5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3'
miRNA:   3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 49830 0.67 0.963881
Target:  5'- aGCGCGUuucgugcAACCaggucgugcucgaUGGGCGccGGCgGCCg -3'
miRNA:   3'- -CGCGCAu------UUGG-------------ACCUGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 50020 0.75 0.647089
Target:  5'- cGCGCGUGGucGCC-GGGCGgcgaGGCgGCCg -3'
miRNA:   3'- -CGCGCAUU--UGGaCCUGCaa--CUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 50129 0.67 0.953057
Target:  5'- cGCGCacGUAGcgcucuuccagcGCCUGGcGCGccuucugcaUGGCCGCCu -3'
miRNA:   3'- -CGCG--CAUU------------UGGACC-UGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 51892 0.68 0.93976
Target:  5'- cGUGCGU--GCCUGaacGGCGUgaacgaggUGauGCCGCCg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCA--------AC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 52485 0.67 0.956625
Target:  5'- gGCGCGccgaAAACUU-GACGUUGGCguguaugCGCCa -3'
miRNA:   3'- -CGCGCa---UUUGGAcCUGCAACUG-------GCGG- -5'
6731 3' -52.6 NC_001875.2 + 54358 0.66 0.973378
Target:  5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3'
miRNA:   3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54734 0.73 0.758938
Target:  5'- gGCGCGcc-GCC-GGGCGaagcGGCCGCCg -3'
miRNA:   3'- -CGCGCauuUGGaCCUGCaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 54961 0.69 0.917424
Target:  5'- cGCGCGUuuGCC-GGACGcgucgcucgcgcUGGgCGCCu -3'
miRNA:   3'- -CGCGCAuuUGGaCCUGCa-----------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 58954 0.66 0.980705
Target:  5'- aGCuuGUucGACUgaGGcCGUUGGCCGCCc -3'
miRNA:   3'- -CGcgCAu-UUGGa-CCuGCAACUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.