miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 5' -51 NC_001875.2 + 128772 0.69 0.935662
Target:  5'- aUGGCGugGGCGCGUUGgcguuguuggacCGGCUCAu--- -3'
miRNA:   3'- gACUGC--UCGUGCAAC------------GCCGAGUuuuu -5'
6731 5' -51 NC_001875.2 + 63635 0.69 0.930319
Target:  5'- -gGACGAGC-CGUuuaaauUGUGGCUgGAAAc -3'
miRNA:   3'- gaCUGCUCGuGCA------ACGCCGAgUUUUu -5'
6731 5' -51 NC_001875.2 + 58398 0.69 0.930319
Target:  5'- gCUGcACGAGCGCcaacuGUUGCGGCggCGGc-- -3'
miRNA:   3'- -GAC-UGCUCGUG-----CAACGCCGa-GUUuuu -5'
6731 5' -51 NC_001875.2 + 102432 0.69 0.930319
Target:  5'- -cGugGugaAGUACGacGCGGCUCAAAGGu -3'
miRNA:   3'- gaCugC---UCGUGCaaCGCCGAGUUUUU- -5'
6731 5' -51 NC_001875.2 + 28274 0.69 0.930319
Target:  5'- -aGACGAGCACGUgcauuauuuacaUGCGGUg------ -3'
miRNA:   3'- gaCUGCUCGUGCA------------ACGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 60242 0.69 0.924706
Target:  5'- aUGGCGAGCACGa-GCGcGCUaGAGGAa -3'
miRNA:   3'- gACUGCUCGUGCaaCGC-CGAgUUUUU- -5'
6731 5' -51 NC_001875.2 + 125331 0.69 0.918824
Target:  5'- aUGuuGGGCgGCGUUGUGGCUUAAu-- -3'
miRNA:   3'- gACugCUCG-UGCAACGCCGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 105837 0.69 0.918824
Target:  5'- -gGACGGGCGCGguguguggGUGGCcggCAAGGAg -3'
miRNA:   3'- gaCUGCUCGUGCaa------CGCCGa--GUUUUU- -5'
6731 5' -51 NC_001875.2 + 26094 0.69 0.912674
Target:  5'- aUGGCGGGCGCG--GCGGCcaccaCGAAAAa -3'
miRNA:   3'- gACUGCUCGUGCaaCGCCGa----GUUUUU- -5'
6731 5' -51 NC_001875.2 + 40857 0.7 0.906258
Target:  5'- aUGACGcGCGCGcgGCGGUUCcAAAu -3'
miRNA:   3'- gACUGCuCGUGCaaCGCCGAGuUUUu -5'
6731 5' -51 NC_001875.2 + 62744 0.7 0.899577
Target:  5'- -cGGCGcGCugGgccGCGGCUCGAGc- -3'
miRNA:   3'- gaCUGCuCGugCaa-CGCCGAGUUUuu -5'
6731 5' -51 NC_001875.2 + 88411 0.7 0.892636
Target:  5'- uCUGACGAGUACGgcggcaGCGGCg------ -3'
miRNA:   3'- -GACUGCUCGUGCaa----CGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 33315 0.7 0.892636
Target:  5'- uUGGCGAGCGCGUgGCGuuGC-CAAGGGu -3'
miRNA:   3'- gACUGCUCGUGCAaCGC--CGaGUUUUU- -5'
6731 5' -51 NC_001875.2 + 55510 0.7 0.883967
Target:  5'- gUGGCGcAGCACcugcucgaugGCGGCUCGGAAu -3'
miRNA:   3'- gACUGC-UCGUGcaa-------CGCCGAGUUUUu -5'
6731 5' -51 NC_001875.2 + 97889 0.7 0.877986
Target:  5'- -cGcACGGGCACGUUGCgGGCgUCGGc-- -3'
miRNA:   3'- gaC-UGCUCGUGCAACG-CCG-AGUUuuu -5'
6731 5' -51 NC_001875.2 + 52174 0.7 0.877227
Target:  5'- uUGACGcGCACGUccgacacUGCGuGCUCAGc-- -3'
miRNA:   3'- gACUGCuCGUGCA-------ACGC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 42018 0.71 0.862351
Target:  5'- -gGACGAGCAguUGUUGCaGCUCGc--- -3'
miRNA:   3'- gaCUGCUCGU--GCAACGcCGAGUuuuu -5'
6731 5' -51 NC_001875.2 + 37761 0.71 0.854179
Target:  5'- -cGGCGAGCACGccgccgUGCGGC-CGGc-- -3'
miRNA:   3'- gaCUGCUCGUGCa-----ACGCCGaGUUuuu -5'
6731 5' -51 NC_001875.2 + 10453 0.71 0.854179
Target:  5'- uUGACGcGGCGCGgcgGCGcGCUCAGu-- -3'
miRNA:   3'- gACUGC-UCGUGCaa-CGC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 66217 0.71 0.854179
Target:  5'- -gGGCGAGCACGcgcGCGGCgUCGGc-- -3'
miRNA:   3'- gaCUGCUCGUGCaa-CGCCG-AGUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.