miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 51905 0.67 0.866105
Target:  5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3'
miRNA:   3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 113733 0.67 0.858469
Target:  5'- cCGugCUGGCccaauggcGCGCCGUGCGCgaccGCg -3'
miRNA:   3'- -GCugGACUGcu------UGUGGCGCGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 81510 0.67 0.858469
Target:  5'- gCGGCC-GGCGcgugcgcgcGGCACCaGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaCUGC---------UUGUGG-CGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 71604 0.67 0.858469
Target:  5'- aGGCgUGGCGGACAUCaaGCGCgaGCUc -3'
miRNA:   3'- gCUGgACUGCUUGUGGcgCGCGa-UGA- -5'
6732 5' -55.7 NC_001875.2 + 38650 0.67 0.850626
Target:  5'- cCGACUcGcCG--UACCGCGUGCUGCUc -3'
miRNA:   3'- -GCUGGaCuGCuuGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 8504 0.67 0.850626
Target:  5'- cCGuCCgUGugG-GCGCCGCGCaCUGCa -3'
miRNA:   3'- -GCuGG-ACugCuUGUGGCGCGcGAUGa -5'
6732 5' -55.7 NC_001875.2 + 120320 0.67 0.850626
Target:  5'- aCGGCCgcgGGCGAACugcuguuguuGCCGU-UGCUGCUg -3'
miRNA:   3'- -GCUGGa--CUGCUUG----------UGGCGcGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 42595 0.67 0.850626
Target:  5'- gCGGCCgcUGACGcAgGCguuUGCGUGCUGCUa -3'
miRNA:   3'- -GCUGG--ACUGCuUgUG---GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 57400 0.67 0.850626
Target:  5'- gGACCccuccacgcUGACGAccaACAUCGCGCccgugauggcguGCUACg -3'
miRNA:   3'- gCUGG---------ACUGCU---UGUGGCGCG------------CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 39270 0.67 0.849831
Target:  5'- gCGACgCggGGCGGcuucugcccgccgACACCaaguGCGCGCUGCa -3'
miRNA:   3'- -GCUG-Ga-CUGCU-------------UGUGG----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 42716 0.67 0.842584
Target:  5'- cCGACCUGGCGcg-GCUGgGCGCgACc -3'
miRNA:   3'- -GCUGGACUGCuugUGGCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 43110 0.67 0.842584
Target:  5'- ---gUUGGCGcGCugCGCGgGCUGCUg -3'
miRNA:   3'- gcugGACUGCuUGugGCGCgCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 83245 0.67 0.842584
Target:  5'- aCGAUUUGAgCGAAUugCGCGaccuggGCUGCg -3'
miRNA:   3'- -GCUGGACU-GCUUGugGCGCg-----CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 40684 0.67 0.842584
Target:  5'- gGACCaUGACGcGGCgcauuuggaaccGCCGCGCGC-GCg -3'
miRNA:   3'- gCUGG-ACUGC-UUG------------UGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 77203 0.67 0.842584
Target:  5'- -aACCgGGCGGcacuaGCACCGCGaCGCgGCUg -3'
miRNA:   3'- gcUGGaCUGCU-----UGUGGCGC-GCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 110171 0.68 0.834348
Target:  5'- gCGcCaCUGGuCGAGCugCGCGCGCg--- -3'
miRNA:   3'- -GCuG-GACU-GCUUGugGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 102475 0.68 0.825926
Target:  5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3'
miRNA:   3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 117277 0.68 0.825926
Target:  5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3'
miRNA:   3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 67127 0.68 0.825926
Target:  5'- cCGcCUUGGCcAGCGCCGUGuUGCUGCg -3'
miRNA:   3'- -GCuGGACUGcUUGUGGCGC-GCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.