Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6732 | 5' | -55.7 | NC_001875.2 | + | 107392 | 0.66 | 0.899056 |
Target: 5'- uGACaUGGCGAACGCCGauucgcucgacgccCGCGCg--- -3' miRNA: 3'- gCUGgACUGCUUGUGGC--------------GCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 48082 | 0.66 | 0.894466 |
Target: 5'- -cGCCUGuuGcAGCACguaCGCGUGCUGCg -3' miRNA: 3'- gcUGGACugC-UUGUG---GCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 23796 | 0.66 | 0.894466 |
Target: 5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3' miRNA: 3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 15889 | 0.66 | 0.894466 |
Target: 5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3' miRNA: 3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 6952 | 0.66 | 0.894466 |
Target: 5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3' miRNA: 3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 34517 | 0.66 | 0.887713 |
Target: 5'- aCGGCagcaaCUG-CGucucuuGCGCCGCGCGCuUGCUc -3' miRNA: 3'- -GCUG-----GACuGCu-----UGUGGCGCGCG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 43578 | 0.66 | 0.887713 |
Target: 5'- uGGCCgagGACGGcACGCaCGCGCaaauCUGCUu -3' miRNA: 3'- gCUGGa--CUGCU-UGUG-GCGCGc---GAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 44763 | 0.66 | 0.887713 |
Target: 5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3' miRNA: 3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 48814 | 0.66 | 0.887713 |
Target: 5'- aGugCUaACauGCuCCGCGCGCUACg -3' miRNA: 3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 107484 | 0.66 | 0.885642 |
Target: 5'- aCGACCacGACGGguaucuggagcugaACGCCGCGgcaCGCUugUu -3' miRNA: 3'- -GCUGGa-CUGCU--------------UGUGGCGC---GCGAugA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 100617 | 0.66 | 0.88144 |
Target: 5'- gCGGCCgcuguuugccucgugGAUGAGCAgCGUGCGCg--- -3' miRNA: 3'- -GCUGGa--------------CUGCUUGUgGCGCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 35807 | 0.66 | 0.880732 |
Target: 5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3' miRNA: 3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 53874 | 0.66 | 0.880732 |
Target: 5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3' miRNA: 3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 128776 | 0.66 | 0.880732 |
Target: 5'- gCGACCccGGCGcgcCGCUGCGCGCcucuUACg -3' miRNA: 3'- -GCUGGa-CUGCuu-GUGGCGCGCG----AUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 68840 | 0.66 | 0.880021 |
Target: 5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3' miRNA: 3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 7424 | 0.67 | 0.873528 |
Target: 5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3' miRNA: 3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 4459 | 0.67 | 0.873528 |
Target: 5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3' miRNA: 3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 42364 | 0.67 | 0.873528 |
Target: 5'- aGcACCacGCGugcCGCCGCGCGCUAUUu -3' miRNA: 3'- gC-UGGacUGCuu-GUGGCGCGCGAUGA- -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 73738 | 0.67 | 0.866105 |
Target: 5'- cCGACCUGuACGAcgcuaACAaCGUGCGC-ACg -3' miRNA: 3'- -GCUGGAC-UGCU-----UGUgGCGCGCGaUGa -5' |
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6732 | 5' | -55.7 | NC_001875.2 | + | 51905 | 0.67 | 0.866105 |
Target: 5'- aCGGCgUGaACGAggugAUGCCGC-CGCUGCa -3' miRNA: 3'- -GCUGgAC-UGCU----UGUGGCGcGCGAUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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