miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 34517 0.66 0.887713
Target:  5'- aCGGCagcaaCUG-CGucucuuGCGCCGCGCGCuUGCUc -3'
miRNA:   3'- -GCUG-----GACuGCu-----UGUGGCGCGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 128870 0.66 0.907274
Target:  5'- aGACCUGggcgGCGAAgccCGCUGCGCGg-ACg -3'
miRNA:   3'- gCUGGAC----UGCUU---GUGGCGCGCgaUGa -5'
6732 5' -55.7 NC_001875.2 + 50147 0.66 0.907274
Target:  5'- -aACCgcGACaAGCGCCGCGUcaGCUACa -3'
miRNA:   3'- gcUGGa-CUGcUUGUGGCGCG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 130465 0.66 0.913322
Target:  5'- gGGCgCUcuCGAACGgCGCGUGCUAUUu -3'
miRNA:   3'- gCUG-GAcuGCUUGUgGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 26241 0.66 0.907274
Target:  5'- uGAUUUGAgaaaCGuGACGCC-CGCGCUGCa -3'
miRNA:   3'- gCUGGACU----GC-UUGUGGcGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 23796 0.66 0.894466
Target:  5'- gGGCCUcGGCGAGCACC-CGCuCaGCa -3'
miRNA:   3'- gCUGGA-CUGCUUGUGGcGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 129189 0.66 0.900987
Target:  5'- aGGUCUGGCGAGCGCgaGCGCGgCgACg -3'
miRNA:   3'- gCUGGACUGCUUGUGg-CGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 40104 0.66 0.907274
Target:  5'- gCGGCggGuCGGGCaACCGCGCGCa--- -3'
miRNA:   3'- -GCUGgaCuGCUUG-UGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 53874 0.66 0.880732
Target:  5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 68840 0.66 0.880021
Target:  5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3'
miRNA:   3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 6952 0.66 0.894466
Target:  5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3'
miRNA:   3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 120661 0.66 0.900987
Target:  5'- aCGAUUUGGCGAGuguCUGCGCgGUUGCg -3'
miRNA:   3'- -GCUGGACUGCUUgu-GGCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 113733 0.67 0.858469
Target:  5'- cCGugCUGGCccaauggcGCGCCGUGCGCgaccGCg -3'
miRNA:   3'- -GCugGACUGcu------UGUGGCGCGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 39270 0.67 0.849831
Target:  5'- gCGACgCggGGCGGcuucugcccgccgACACCaaguGCGCGCUGCa -3'
miRNA:   3'- -GCUG-Ga-CUGCU-------------UGUGG----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 81510 0.67 0.858469
Target:  5'- gCGGCC-GGCGcgugcgcgcGGCACCaGCGCGCcGCg -3'
miRNA:   3'- -GCUGGaCUGC---------UUGUGG-CGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 108833 0.67 0.866105
Target:  5'- gCGGCU--GCGGGCACgGCG-GCUGCg -3'
miRNA:   3'- -GCUGGacUGCUUGUGgCGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 42364 0.67 0.873528
Target:  5'- aGcACCacGCGugcCGCCGCGCGCUAUUu -3'
miRNA:   3'- gC-UGGacUGCuu-GUGGCGCGCGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.