miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 128776 0.66 0.880732
Target:  5'- gCGACCccGGCGcgcCGCUGCGCGCcucuUACg -3'
miRNA:   3'- -GCUGGa-CUGCuu-GUGGCGCGCG----AUGa -5'
6732 5' -55.7 NC_001875.2 + 122410 0.66 0.913322
Target:  5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3'
miRNA:   3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 48814 0.66 0.887713
Target:  5'- aGugCUaACauGCuCCGCGCGCUACg -3'
miRNA:   3'- gCugGAcUGcuUGuGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 41237 0.66 0.907274
Target:  5'- aCGGCCU--CGGcCGUCGCGUGCUACa -3'
miRNA:   3'- -GCUGGAcuGCUuGUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 68840 0.66 0.880021
Target:  5'- -uGCCUGGCGGacgggucGCACgCGUGCGCg--- -3'
miRNA:   3'- gcUGGACUGCU-------UGUG-GCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 53874 0.66 0.880732
Target:  5'- uCGGCCUGuuggucguGCGGcCGCCGCgGCGCa--- -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCG-CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 35807 0.66 0.880732
Target:  5'- -uGCCUGAUGGccGCGCaCuuGCGCUGCg -3'
miRNA:   3'- gcUGGACUGCU--UGUG-GcgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 5088 0.66 0.900987
Target:  5'- uCGACCaccuaaugGGGCugCGCGCGCUAa- -3'
miRNA:   3'- -GCUGGacug----CUUGugGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 44763 0.66 0.887713
Target:  5'- uCGugCUGguuggggaACGAGCGCCGC-UGCuUGCUa -3'
miRNA:   3'- -GCugGAC--------UGCUUGUGGCGcGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5'
6732 5' -55.7 NC_001875.2 + 6952 0.66 0.894466
Target:  5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3'
miRNA:   3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 70621 0.66 0.911533
Target:  5'- uGGCCUGccccgaacauuuguACGAcgGCGCCGCGUuuGCgUGCa -3'
miRNA:   3'- gCUGGAC--------------UGCU--UGUGGCGCG--CG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 72557 0.66 0.900987
Target:  5'- gGGCgCUG-CGGGCGCgggcgCGgGCGCUGCg -3'
miRNA:   3'- gCUG-GACuGCUUGUG-----GCgCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 15889 0.66 0.894466
Target:  5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3'
miRNA:   3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 107484 0.66 0.885642
Target:  5'- aCGACCacGACGGguaucuggagcugaACGCCGCGgcaCGCUugUu -3'
miRNA:   3'- -GCUGGa-CUGCU--------------UGUGGCGC---GCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 107392 0.66 0.899056
Target:  5'- uGACaUGGCGAACGCCGauucgcucgacgccCGCGCg--- -3'
miRNA:   3'- gCUGgACUGCUUGUGGC--------------GCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 100617 0.66 0.88144
Target:  5'- gCGGCCgcuguuugccucgugGAUGAGCAgCGUGCGCg--- -3'
miRNA:   3'- -GCUGGa--------------CUGCUUGUgGCGCGCGauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.