miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 618 0.68 0.816457
Target:  5'- aCGGCCUGugcaagcGCGAACACuCGC-CGgUGCa -3'
miRNA:   3'- -GCUGGAC-------UGCUUGUG-GCGcGCgAUGa -5'
6732 5' -55.7 NC_001875.2 + 4459 0.67 0.873528
Target:  5'- uGGCCaGGCucuGAGCGCCGUccGCGCaUGCUu -3'
miRNA:   3'- gCUGGaCUG---CUUGUGGCG--CGCG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 5088 0.66 0.900987
Target:  5'- uCGACCaccuaaugGGGCugCGCGCGCUAa- -3'
miRNA:   3'- -GCUGGacug----CUUGugGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 5301 0.68 0.808556
Target:  5'- cCGcGCCcGACGAcCACUccauuGCGCGCUACc -3'
miRNA:   3'- -GC-UGGaCUGCUuGUGG-----CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 6612 1.08 0.003227
Target:  5'- uCGACCUGACGAACACCGCGCGCUACUa -3'
miRNA:   3'- -GCUGGACUGCUUGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 6780 0.69 0.743134
Target:  5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3'
miRNA:   3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 6952 0.66 0.894466
Target:  5'- gCGugCgccGCGAcauCGCCacgGCGCGCUGCUu -3'
miRNA:   3'- -GCugGac-UGCUu--GUGG---CGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 7005 0.68 0.808556
Target:  5'- uCGACgUGGCGcgccaguugcugGACguaagcgaggugGCCGCGCGCUugUc -3'
miRNA:   3'- -GCUGgACUGC------------UUG------------UGGCGCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 7083 0.71 0.652404
Target:  5'- cCGGCCUGuGCGcagacauGCAgCGCGCGCUGg- -3'
miRNA:   3'- -GCUGGAC-UGCu------UGUgGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 7263 0.66 0.900987
Target:  5'- gCGGCCUGGCGcggguCGCCGaCGUGUUu-- -3'
miRNA:   3'- -GCUGGACUGCuu---GUGGC-GCGCGAuga -5'
6732 5' -55.7 NC_001875.2 + 7270 0.71 0.621546
Target:  5'- gCGGCgCgUGGCGGucaaugucgGCAgCGCGCGCUGCa -3'
miRNA:   3'- -GCUG-G-ACUGCU---------UGUgGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7424 0.67 0.873528
Target:  5'- gGGCCcaacGACGAggGCaACUGCGCGCcgGCg -3'
miRNA:   3'- gCUGGa---CUGCU--UG-UGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 7519 0.68 0.817326
Target:  5'- cCGAUCcGGCGGGCACUGCaccGCagGCUACa -3'
miRNA:   3'- -GCUGGaCUGCUUGUGGCG---CG--CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7635 0.7 0.693276
Target:  5'- cCGACCUG-CGcacacACGCCGaCGCGCU-CUa -3'
miRNA:   3'- -GCUGGACuGCu----UGUGGC-GCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 8504 0.67 0.850626
Target:  5'- cCGuCCgUGugG-GCGCCGCGCaCUGCa -3'
miRNA:   3'- -GCuGG-ACugCuUGUGGCGCGcGAUGa -5'
6732 5' -55.7 NC_001875.2 + 10373 0.75 0.444176
Target:  5'- aCGGCCUGGCcgaaaacuuuGAACGCCGCcGCGCcgugGCg -3'
miRNA:   3'- -GCUGGACUG----------CUUGUGGCG-CGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 15889 0.66 0.894466
Target:  5'- aCGugCauUGcCGAAgACC-CGCGCUACUu -3'
miRNA:   3'- -GCugG--ACuGCUUgUGGcGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 16540 0.68 0.833514
Target:  5'- gCGugCaauacaaUGACGuGCGCgGCGCGCUAa- -3'
miRNA:   3'- -GCugG-------ACUGCuUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 17091 0.68 0.808556
Target:  5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3'
miRNA:   3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 17485 0.73 0.539148
Target:  5'- uGGCCagcaaguUGGCGGACGCCGCGuCGUUuGCUa -3'
miRNA:   3'- gCUGG-------ACUGCUUGUGGCGC-GCGA-UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.