miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 6612 1.08 0.003227
Target:  5'- uCGACCUGACGAACACCGCGCGCUACUa -3'
miRNA:   3'- -GCUGGACUGCUUGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 125073 0.82 0.179051
Target:  5'- uCGGCCgagGGCGuGgACCGCGCGCUACa -3'
miRNA:   3'- -GCUGGa--CUGCuUgUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 35226 0.78 0.312992
Target:  5'- cCGACCUGgccGCGAuuguGCACaaaaagCGCGCGCUGCUg -3'
miRNA:   3'- -GCUGGAC---UGCU----UGUG------GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 63856 0.77 0.324695
Target:  5'- gCGACCgacaaaccgcaucGGCGAACGCUGCGCGCcGCg -3'
miRNA:   3'- -GCUGGa------------CUGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 99279 0.77 0.3352
Target:  5'- gCGACCUGGgGAAUugCGaCGCGUUGCc -3'
miRNA:   3'- -GCUGGACUgCUUGugGC-GCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 101070 0.76 0.374718
Target:  5'- gCGAgCgcGGCGAGCGucuCCGCGCGCUGCg -3'
miRNA:   3'- -GCUgGa-CUGCUUGU---GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 10373 0.75 0.444176
Target:  5'- aCGGCCUGGCcgaaaacuuuGAACGCCGCcGCGCcgugGCg -3'
miRNA:   3'- -GCUGGACUG----------CUUGUGGCG-CGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 72375 0.74 0.481507
Target:  5'- uGGCggaUUGGCGGACGCCGCGuCGCUGg- -3'
miRNA:   3'- gCUG---GACUGCUUGUGGCGC-GCGAUga -5'
6732 5' -55.7 NC_001875.2 + 66236 0.73 0.51931
Target:  5'- gCGACCUGagccggcggcuggGCGAGCA-CGCGCGCgGCg -3'
miRNA:   3'- -GCUGGAC-------------UGCUUGUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 33463 0.73 0.539148
Target:  5'- cCGGCCagUGGuCGAaaguggcGCGCCGCGCGCUGg- -3'
miRNA:   3'- -GCUGG--ACU-GCU-------UGUGGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 17485 0.73 0.539148
Target:  5'- uGGCCagcaaguUGGCGGACGCCGCGuCGUUuGCUa -3'
miRNA:   3'- gCUGG-------ACUGCUUGUGGCGC-GCGA-UGA- -5'
6732 5' -55.7 NC_001875.2 + 98309 0.73 0.550169
Target:  5'- aCGGCCcGACGuGCGCCGCcCGCUGa- -3'
miRNA:   3'- -GCUGGaCUGCuUGUGGCGcGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 43012 0.73 0.560248
Target:  5'- gGACCUGcgccuGCGGcGCGCCggauuuGCGCGCUACg -3'
miRNA:   3'- gCUGGAC-----UGCU-UGUGG------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 51542 0.73 0.560248
Target:  5'- -aGCgCUGGCGAacACGCCGaCGCGCUugUc -3'
miRNA:   3'- gcUG-GACUGCU--UGUGGC-GCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 30956 0.72 0.58055
Target:  5'- -cGCCaUGGCGccCACgCGCGCGCUGCg -3'
miRNA:   3'- gcUGG-ACUGCuuGUG-GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 77960 0.72 0.601002
Target:  5'- aCGACUugugguuuuUGAgGAACGCCGUGUGCUcaGCg -3'
miRNA:   3'- -GCUGG---------ACUgCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 66036 0.72 0.610239
Target:  5'- -cGCUUGGCGccgcgcaGGCACCGCGCGCcgACg -3'
miRNA:   3'- gcUGGACUGC-------UUGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 98854 0.72 0.611266
Target:  5'- aCGACCgcgaGCGcAACACCGUGCGCg--- -3'
miRNA:   3'- -GCUGGac--UGC-UUGUGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 37356 0.71 0.621546
Target:  5'- gCGGCCgcgcgcucguGCGAACGCgCGCGCcGCUGCa -3'
miRNA:   3'- -GCUGGac--------UGCUUGUG-GCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 56455 0.71 0.621546
Target:  5'- aGGCCggUGGCGGGguCCGCGCGCg--- -3'
miRNA:   3'- gCUGG--ACUGCUUguGGCGCGCGauga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.