miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 7270 0.71 0.621546
Target:  5'- gCGGCgCgUGGCGGucaaugucgGCAgCGCGCGCUGCa -3'
miRNA:   3'- -GCUG-G-ACUGCU---------UGUgGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95567 0.71 0.652404
Target:  5'- aGGCCUuaccuuuGCG-ACGCCgGCGCGCUGCg -3'
miRNA:   3'- gCUGGAc------UGCuUGUGG-CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 7083 0.71 0.652404
Target:  5'- cCGGCCUGuGCGcagacauGCAgCGCGCGCUGg- -3'
miRNA:   3'- -GCUGGAC-UGCu------UGUgGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 80293 0.71 0.652404
Target:  5'- uCGcACUUGACGAGCGCCGUcgccaGCGCg--- -3'
miRNA:   3'- -GC-UGGACUGCUUGUGGCG-----CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 102754 0.71 0.662668
Target:  5'- gCGGCCUuugcACGAGCGCUGCaGCGCUucaaaACUg -3'
miRNA:   3'- -GCUGGAc---UGCUUGUGGCG-CGCGA-----UGA- -5'
6732 5' -55.7 NC_001875.2 + 29572 0.71 0.662668
Target:  5'- gGGCCgcggcGACGAgguGCGCUGCGCGUuuUGCa -3'
miRNA:   3'- gCUGGa----CUGCU---UGUGGCGCGCG--AUGa -5'
6732 5' -55.7 NC_001875.2 + 44615 0.71 0.672907
Target:  5'- aCGACUUGGCGcacuGCGCCGacgGCGCcuUGCUg -3'
miRNA:   3'- -GCUGGACUGCu---UGUGGCg--CGCG--AUGA- -5'
6732 5' -55.7 NC_001875.2 + 7635 0.7 0.693276
Target:  5'- cCGACCUG-CGcacacACGCCGaCGCGCU-CUa -3'
miRNA:   3'- -GCUGGACuGCu----UGUGGC-GCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 118306 0.7 0.703388
Target:  5'- cCGACaggGuCGAggcgGCcgGCCGCGCGCUGCa -3'
miRNA:   3'- -GCUGga-CuGCU----UG--UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 43011 0.7 0.703388
Target:  5'- uGGCCUccauuGCGAGUGCCGCGCGCcGCg -3'
miRNA:   3'- gCUGGAc----UGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 110662 0.7 0.703388
Target:  5'- gGGCCcgccuuguUGACGAgcaGCGCCGUGUGCUugACg -3'
miRNA:   3'- gCUGG--------ACUGCU---UGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 129532 0.7 0.713439
Target:  5'- cCGAgCUGGcCGAGCugCGCGCGgCcACg -3'
miRNA:   3'- -GCUgGACU-GCUUGugGCGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 85435 0.7 0.719436
Target:  5'- gGACgUGuccacauccacguCGGACACCGUGuCGCUGCa -3'
miRNA:   3'- gCUGgACu------------GCUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 44001 0.7 0.723419
Target:  5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3'
miRNA:   3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 23932 0.7 0.723419
Target:  5'- gCGACCUGggcaACGuGCGCUcuGCGgGCUGCa -3'
miRNA:   3'- -GCUGGAC----UGCuUGUGG--CGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 61540 0.7 0.723419
Target:  5'- gCGGCCaucaUGugGGACACgGUGCGUUGg- -3'
miRNA:   3'- -GCUGG----ACugCUUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 33525 0.7 0.733321
Target:  5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5'
6732 5' -55.7 NC_001875.2 + 71918 0.7 0.733321
Target:  5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3'
miRNA:   3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 38457 0.7 0.737257
Target:  5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3'
miRNA:   3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 44529 0.69 0.743134
Target:  5'- uCGGCCaccaUGGCGuaaucgacguugGGCAgCCGCGCGUUGCg -3'
miRNA:   3'- -GCUGG----ACUGC------------UUGU-GGCGCGCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.