miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 71918 0.7 0.733321
Target:  5'- gCGugCgcgucGGCGAGCgccuugACCGCGCGCUccGCg -3'
miRNA:   3'- -GCugGa----CUGCUUG------UGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 102754 0.71 0.662668
Target:  5'- gCGGCCUuugcACGAGCGCUGCaGCGCUucaaaACUg -3'
miRNA:   3'- -GCUGGAc---UGCUUGUGGCG-CGCGA-----UGA- -5'
6732 5' -55.7 NC_001875.2 + 7635 0.7 0.693276
Target:  5'- cCGACCUG-CGcacacACGCCGaCGCGCU-CUa -3'
miRNA:   3'- -GCUGGACuGCu----UGUGGC-GCGCGAuGA- -5'
6732 5' -55.7 NC_001875.2 + 43011 0.7 0.703388
Target:  5'- uGGCCUccauuGCGAGUGCCGCGCGCcGCg -3'
miRNA:   3'- gCUGGAc----UGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 118306 0.7 0.703388
Target:  5'- cCGACaggGuCGAggcgGCcgGCCGCGCGCUGCa -3'
miRNA:   3'- -GCUGga-CuGCU----UG--UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 129532 0.7 0.713439
Target:  5'- cCGAgCUGGcCGAGCugCGCGCGgCcACg -3'
miRNA:   3'- -GCUgGACU-GCUUGugGCGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 85435 0.7 0.719436
Target:  5'- gGACgUGuccacauccacguCGGACACCGUGuCGCUGCa -3'
miRNA:   3'- gCUGgACu------------GCUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 61540 0.7 0.723419
Target:  5'- gCGGCCaucaUGugGGACACgGUGCGUUGg- -3'
miRNA:   3'- -GCUGG----ACugCUUGUGgCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 44001 0.7 0.723419
Target:  5'- -aGCCcGACGGGCGCCGUGCccaGCgUGCUg -3'
miRNA:   3'- gcUGGaCUGCUUGUGGCGCG---CG-AUGA- -5'
6732 5' -55.7 NC_001875.2 + 7083 0.71 0.652404
Target:  5'- cCGGCCUGuGCGcagacauGCAgCGCGCGCUGg- -3'
miRNA:   3'- -GCUGGAC-UGCu------UGUgGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 80293 0.71 0.652404
Target:  5'- uCGcACUUGACGAGCGCCGUcgccaGCGCg--- -3'
miRNA:   3'- -GC-UGGACUGCUUGUGGCG-----CGCGauga -5'
6732 5' -55.7 NC_001875.2 + 37356 0.71 0.621546
Target:  5'- gCGGCCgcgcgcucguGCGAACGCgCGCGCcGCUGCa -3'
miRNA:   3'- -GCUGGac--------UGCUUGUG-GCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 10373 0.75 0.444176
Target:  5'- aCGGCCUGGCcgaaaacuuuGAACGCCGCcGCGCcgugGCg -3'
miRNA:   3'- -GCUGGACUG----------CUUGUGGCG-CGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 17485 0.73 0.539148
Target:  5'- uGGCCagcaaguUGGCGGACGCCGCGuCGUUuGCUa -3'
miRNA:   3'- gCUGG-------ACUGCUUGUGGCGC-GCGA-UGA- -5'
6732 5' -55.7 NC_001875.2 + 33463 0.73 0.539148
Target:  5'- cCGGCCagUGGuCGAaaguggcGCGCCGCGCGCUGg- -3'
miRNA:   3'- -GCUGG--ACU-GCU-------UGUGGCGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 51542 0.73 0.560248
Target:  5'- -aGCgCUGGCGAacACGCCGaCGCGCUugUc -3'
miRNA:   3'- gcUG-GACUGCU--UGUGGC-GCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 30956 0.72 0.58055
Target:  5'- -cGCCaUGGCGccCACgCGCGCGCUGCg -3'
miRNA:   3'- gcUGG-ACUGCuuGUG-GCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 66036 0.72 0.610239
Target:  5'- -cGCUUGGCGccgcgcaGGCACCGCGCGCcgACg -3'
miRNA:   3'- gcUGGACUGC-------UUGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 98854 0.72 0.611266
Target:  5'- aCGACCgcgaGCGcAACACCGUGCGCg--- -3'
miRNA:   3'- -GCUGGac--UGC-UUGUGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 56455 0.71 0.621546
Target:  5'- aGGCCggUGGCGGGguCCGCGCGCg--- -3'
miRNA:   3'- gCUGG--ACUGCUUguGGCGCGCGauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.