miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 6612 1.08 0.003227
Target:  5'- uCGACCUGACGAACACCGCGCGCUACUa -3'
miRNA:   3'- -GCUGGACUGCUUGUGGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 38457 0.7 0.737257
Target:  5'- cCGGCCUugucGGCGcuCGCCaccgcgucgucguacGCGCGCUGCg -3'
miRNA:   3'- -GCUGGA----CUGCuuGUGG---------------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 108420 0.69 0.752849
Target:  5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3'
miRNA:   3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 122410 0.66 0.913322
Target:  5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3'
miRNA:   3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 101070 0.76 0.374718
Target:  5'- gCGAgCgcGGCGAGCGucuCCGCGCGCUGCg -3'
miRNA:   3'- -GCUgGa-CUGCUUGU---GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 72375 0.74 0.481507
Target:  5'- uGGCggaUUGGCGGACGCCGCGuCGCUGg- -3'
miRNA:   3'- gCUG---GACUGCUUGUGGCGC-GCGAUga -5'
6732 5' -55.7 NC_001875.2 + 98309 0.73 0.550169
Target:  5'- aCGGCCcGACGuGCGCCGCcCGCUGa- -3'
miRNA:   3'- -GCUGGaCUGCuUGUGGCGcGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 43012 0.73 0.560248
Target:  5'- gGACCUGcgccuGCGGcGCGCCggauuuGCGCGCUACg -3'
miRNA:   3'- gCUGGAC-----UGCU-UGUGG------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95567 0.71 0.652404
Target:  5'- aGGCCUuaccuuuGCG-ACGCCgGCGCGCUGCg -3'
miRNA:   3'- gCUGGAc------UGCuUGUGG-CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 33525 0.7 0.733321
Target:  5'- aCGGCCUGcuucuuuuGCGAcUGCCGCGUGCgugauugGCUg -3'
miRNA:   3'- -GCUGGAC--------UGCUuGUGGCGCGCGa------UGA- -5'
6732 5' -55.7 NC_001875.2 + 44615 0.71 0.672907
Target:  5'- aCGACUUGGCGcacuGCGCCGacgGCGCcuUGCUg -3'
miRNA:   3'- -GCUGGACUGCu---UGUGGCg--CGCG--AUGA- -5'
6732 5' -55.7 NC_001875.2 + 7270 0.71 0.621546
Target:  5'- gCGGCgCgUGGCGGucaaugucgGCAgCGCGCGCUGCa -3'
miRNA:   3'- -GCUG-G-ACUGCU---------UGUgGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 125073 0.82 0.179051
Target:  5'- uCGGCCgagGGCGuGgACCGCGCGCUACa -3'
miRNA:   3'- -GCUGGa--CUGCuUgUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 110662 0.7 0.703388
Target:  5'- gGGCCcgccuuguUGACGAgcaGCGCCGUGUGCUugACg -3'
miRNA:   3'- gCUGG--------ACUGCU---UGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 63856 0.77 0.324695
Target:  5'- gCGACCgacaaaccgcaucGGCGAACGCUGCGCGCcGCg -3'
miRNA:   3'- -GCUGGa------------CUGCUUGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 77960 0.72 0.601002
Target:  5'- aCGACUugugguuuuUGAgGAACGCCGUGUGCUcaGCg -3'
miRNA:   3'- -GCUGG---------ACUgCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 23932 0.7 0.723419
Target:  5'- gCGACCUGggcaACGuGCGCUcuGCGgGCUGCa -3'
miRNA:   3'- -GCUGGAC----UGCuUGUGG--CGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 6780 0.69 0.743134
Target:  5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3'
miRNA:   3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 99279 0.77 0.3352
Target:  5'- gCGACCUGGgGAAUugCGaCGCGUUGCc -3'
miRNA:   3'- -GCUGGACUgCUUGugGC-GCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 66236 0.73 0.51931
Target:  5'- gCGACCUGagccggcggcuggGCGAGCA-CGCGCGCgGCg -3'
miRNA:   3'- -GCUGGAC-------------UGCUUGUgGCGCGCGaUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.