miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 37750 0.66 0.642933
Target:  5'- cCGCCGUGcggccggccgcGGCGCuCGCGCCgGC-GCa -3'
miRNA:   3'- uGUGGUAC-----------CCGUGcGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 56247 0.66 0.642933
Target:  5'- cACGCCG-----GCGCGCGgCUGCAGUa -3'
miRNA:   3'- -UGUGGUacccgUGCGCGCgGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 70407 0.66 0.642933
Target:  5'- aGCGgCGacGGCuCGgGCGCCgGCGGCg -3'
miRNA:   3'- -UGUgGUacCCGuGCgCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 5935 0.66 0.642933
Target:  5'- aGCGCCGcgcaGGUggGCGCgGCCUcGCAGUa -3'
miRNA:   3'- -UGUGGUac--CCGugCGCG-CGGA-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 33465 0.66 0.683291
Target:  5'- -gGCCAguggucgaaagUGGcGCGcCGCGCGCUggGguGCg -3'
miRNA:   3'- ugUGGU-----------ACC-CGU-GCGCGCGGa-CguCG- -5'
6734 3' -60.4 NC_001875.2 + 12422 0.66 0.683291
Target:  5'- cGCGCCAagcaGGccguuGCGUGCGCGCC-GCGGUg -3'
miRNA:   3'- -UGUGGUa---CC-----CGUGCGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 33070 0.66 0.663161
Target:  5'- gGCGCCgguugcgcGUGcGCgACGCGCGCguguucagccguUUGCAGCg -3'
miRNA:   3'- -UGUGG--------UACcCG-UGCGCGCG------------GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 114212 0.66 0.632802
Target:  5'- cUAgCGUGGcGUACGCGCaGCCcGCGuGCu -3'
miRNA:   3'- uGUgGUACC-CGUGCGCG-CGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 90401 0.67 0.582289
Target:  5'- gACGCCGaaGGCGCGgGCGCggGCgcgGGCa -3'
miRNA:   3'- -UGUGGUacCCGUGCgCGCGgaCG---UCG- -5'
6734 3' -60.4 NC_001875.2 + 29010 0.67 0.582289
Target:  5'- uGC-CCugcGGGCACGUGgugGCgUGCGGCa -3'
miRNA:   3'- -UGuGGua-CCCGUGCGCg--CGgACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 32993 0.67 0.582289
Target:  5'- gGCACCAgguuuUGGuGcCACGCuCGCaaGCGGCg -3'
miRNA:   3'- -UGUGGU-----ACC-C-GUGCGcGCGgaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 13552 0.67 0.582289
Target:  5'- gGC-CCGU--GCAaGCGCGCCUGguGCc -3'
miRNA:   3'- -UGuGGUAccCGUgCGCGCGGACguCG- -5'
6734 3' -60.4 NC_001875.2 + 49126 0.67 0.602437
Target:  5'- uACACCuUGGGCGCuguguguaaagGCGCGUUUGgCuuGCa -3'
miRNA:   3'- -UGUGGuACCCGUG-----------CGCGCGGAC-Gu-CG- -5'
6734 3' -60.4 NC_001875.2 + 30862 0.67 0.582289
Target:  5'- aACGCCGcGGccugcaGCGCGgGCGCUUGCuuaagaGGCa -3'
miRNA:   3'- -UGUGGUaCC------CGUGCgCGCGGACG------UCG- -5'
6734 3' -60.4 NC_001875.2 + 29280 0.67 0.582289
Target:  5'- cGCGCCGgcgGGGCGCggucgugugGCGUGUCgUGC-GCg -3'
miRNA:   3'- -UGUGGUa--CCCGUG---------CGCGCGG-ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 113582 0.67 0.600417
Target:  5'- cGCGCCAUuGGGCcagcacgGCguucgagucggcgGCGgGCCgcgGCGGCa -3'
miRNA:   3'- -UGUGGUA-CCCG-------UG-------------CGCgCGGa--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 71537 0.67 0.582289
Target:  5'- -aACCGcu-GCgACGCGuCGCCUGCAGUg -3'
miRNA:   3'- ugUGGUaccCG-UGCGC-GCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 37094 0.67 0.582289
Target:  5'- gACACCgccgcGUGGGUgugcggGCGCgGCGCCgcgcCGGCg -3'
miRNA:   3'- -UGUGG-----UACCCG------UGCG-CGCGGac--GUCG- -5'
6734 3' -60.4 NC_001875.2 + 120375 0.67 0.582289
Target:  5'- -gGCCAcgaaUGGGUugGCGCGCaucguUGUguucAGCg -3'
miRNA:   3'- ugUGGU----ACCCGugCGCGCGg----ACG----UCG- -5'
6734 3' -60.4 NC_001875.2 + 9851 0.67 0.57627
Target:  5'- cCACgAUGGGUgcacGCGCacaauuuuuucgacaGCGCCgcGCAGCu -3'
miRNA:   3'- uGUGgUACCCG----UGCG---------------CGCGGa-CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.