miRNA display CGI


Results 21 - 40 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 122313 0.66 0.653055
Target:  5'- uACACCGcuccguugGGGCucgccgucgUGCGCGCCgGCcGCg -3'
miRNA:   3'- -UGUGGUa-------CCCGu--------GCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 107981 0.66 0.673243
Target:  5'- -aGCCAugaauuuuUGGGCggcuuuuaGCGCGUGCUUGguGg -3'
miRNA:   3'- ugUGGU--------ACCCG--------UGCGCGCGGACguCg -5'
6734 3' -60.4 NC_001875.2 + 79120 0.66 0.663161
Target:  5'- gGCGuuGUcGGCgGCGgGCGCC-GCGGCg -3'
miRNA:   3'- -UGUggUAcCCG-UGCgCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 31109 0.66 0.663161
Target:  5'- cGCGCgCGUGGGCGCcaugGCGaGaCCugUGCGGCc -3'
miRNA:   3'- -UGUG-GUACCCGUG----CGCgC-GG--ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 37750 0.66 0.642933
Target:  5'- cCGCCGUGcggccggccgcGGCGCuCGCGCCgGC-GCa -3'
miRNA:   3'- uGUGGUAC-----------CCGUGcGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 130849 0.66 0.683291
Target:  5'- -gGCCGUggcaaaagugGGGC-CGCGUGCCgUGCAuGUu -3'
miRNA:   3'- ugUGGUA----------CCCGuGCGCGCGG-ACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 12422 0.66 0.683291
Target:  5'- cGCGCCAagcaGGccguuGCGUGCGCGCC-GCGGUg -3'
miRNA:   3'- -UGUGGUa---CC-----CGUGCGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 117931 0.66 0.673243
Target:  5'- aGCugCAggccGGCGUGCGCGCC-GCcGCg -3'
miRNA:   3'- -UGugGUac--CCGUGCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 31011 0.66 0.632802
Target:  5'- cGCugCA--GGC-CGCgGCGUUUGCGGCg -3'
miRNA:   3'- -UGugGUacCCGuGCG-CGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 30262 0.66 0.653055
Target:  5'- aGCACCGUcacGGcGUACaGCGCGCa--CAGCa -3'
miRNA:   3'- -UGUGGUA---CC-CGUG-CGCGCGgacGUCG- -5'
6734 3' -60.4 NC_001875.2 + 50836 0.66 0.683291
Target:  5'- gGCAgCAac-GCGuCGCGCGCCUuuuucaGCAGCa -3'
miRNA:   3'- -UGUgGUaccCGU-GCGCGCGGA------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 3698 0.66 0.653055
Target:  5'- cGCGCCAcGGcGCcggugACGUGCGCCaaaUGC-GCa -3'
miRNA:   3'- -UGUGGUaCC-CG-----UGCGCGCGG---ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 36989 0.66 0.663161
Target:  5'- uAUACauuaGUGGcGCGgGCGCGCaaCUGCcGCg -3'
miRNA:   3'- -UGUGg---UACC-CGUgCGCGCG--GACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 109794 0.66 0.653055
Target:  5'- gACGCCGcguUGGGCA-GCGCGUUUcGCAu- -3'
miRNA:   3'- -UGUGGU---ACCCGUgCGCGCGGA-CGUcg -5'
6734 3' -60.4 NC_001875.2 + 33465 0.66 0.683291
Target:  5'- -gGCCAguggucgaaagUGGcGCGcCGCGCGCUggGguGCg -3'
miRNA:   3'- ugUGGU-----------ACC-CGU-GCGCGCGGa-CguCG- -5'
6734 3' -60.4 NC_001875.2 + 39776 0.66 0.660132
Target:  5'- cGCGCCAUugucGGCAaacgaagcguuguuCGCGgGCUUGCuGCu -3'
miRNA:   3'- -UGUGGUAc---CCGU--------------GCGCgCGGACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 17054 0.66 0.645971
Target:  5'- cGCGCCGucgucgaUGGGCguaaagucgauagaaGCGguCGCGCUgGCGGCg -3'
miRNA:   3'- -UGUGGU-------ACCCG---------------UGC--GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 779 0.66 0.639894
Target:  5'- aACGCa--GGGCGCGCuugacaacGCGCUggugguuaauauagUGCGGCa -3'
miRNA:   3'- -UGUGguaCCCGUGCG--------CGCGG--------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 37268 0.66 0.653055
Target:  5'- aACGCCGgcgcGGCGC-CGCGCCcgcacacccacGCGGCg -3'
miRNA:   3'- -UGUGGUac--CCGUGcGCGCGGa----------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 7481 0.66 0.673243
Target:  5'- uGCGCCAUuggacgGGaGCACuuuGCGCaccacaaaacgGCCUGCAuGCa -3'
miRNA:   3'- -UGUGGUA------CC-CGUG---CGCG-----------CGGACGU-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.