miRNA display CGI


Results 21 - 40 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 10577 0.67 0.598399
Target:  5'- uGCGCCAaauguUGGGUagugcaGCGgGUGCCgcgccacggcgcgGCGGCg -3'
miRNA:   3'- -UGUGGU-----ACCCG------UGCgCGCGGa------------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 10999 0.7 0.447697
Target:  5'- cGCugCA--GGCGCGCGUGCCcaUGguGUg -3'
miRNA:   3'- -UGugGUacCCGUGCGCGCGG--ACguCG- -5'
6734 3' -60.4 NC_001875.2 + 11032 0.76 0.187692
Target:  5'- cCAUgAUGGGCgaccaguuucaccACGCGCGCaaaCUGCAGCa -3'
miRNA:   3'- uGUGgUACCCG-------------UGCGCGCG---GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 11158 1.11 0.000607
Target:  5'- cACACCAUGGGCACGCGCGCCUGCAGCg -3'
miRNA:   3'- -UGUGGUACCCGUGCGCGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 11250 0.73 0.296563
Target:  5'- gGCGCCGagacgGGGCcguguccaggGCGCGCGCCacgccaaacugcUGCAGUu -3'
miRNA:   3'- -UGUGGUa----CCCG----------UGCGCGCGG------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 11941 0.7 0.438717
Target:  5'- cGCGCCGacuGUGCGCGCGaCCgGCGGCg -3'
miRNA:   3'- -UGUGGUaccCGUGCGCGC-GGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 12422 0.66 0.683291
Target:  5'- cGCGCCAagcaGGccguuGCGUGCGCGCC-GCGGUg -3'
miRNA:   3'- -UGUGGUa---CC-----CGUGCGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 13379 0.68 0.542464
Target:  5'- cGCACCGUuucuacgcacGGCACcagGCGCGCUUGCacgGGCc -3'
miRNA:   3'- -UGUGGUAc---------CCGUG---CGCGCGGACG---UCG- -5'
6734 3' -60.4 NC_001875.2 + 13552 0.67 0.582289
Target:  5'- gGC-CCGU--GCAaGCGCGCCUGguGCc -3'
miRNA:   3'- -UGuGGUAccCGUgCGCGCGGACguCG- -5'
6734 3' -60.4 NC_001875.2 + 13715 0.7 0.429841
Target:  5'- aACGCCAcgcaagagUGGcugcaGCugGCGCGCUUGCAa- -3'
miRNA:   3'- -UGUGGU--------ACC-----CGugCGCGCGGACGUcg -5'
6734 3' -60.4 NC_001875.2 + 14851 0.68 0.52094
Target:  5'- aACACgGUGGGCuCGuCGUGCCUGaccuccauucuGCa -3'
miRNA:   3'- -UGUGgUACCCGuGC-GCGCGGACgu---------CG- -5'
6734 3' -60.4 NC_001875.2 + 17054 0.66 0.645971
Target:  5'- cGCGCCGucgucgaUGGGCguaaagucgauagaaGCGguCGCGCUgGCGGCg -3'
miRNA:   3'- -UGUGGU-------ACCCG---------------UGC--GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 17092 0.71 0.37081
Target:  5'- -gGCC--GGGCAagcCGCGCGCCacugGCGGCc -3'
miRNA:   3'- ugUGGuaCCCGU---GCGCGCGGa---CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 17250 0.69 0.502623
Target:  5'- cCGCCAguGGCGCGCGgcuugccCGCCUGacCAGCu -3'
miRNA:   3'- uGUGGUacCCGUGCGC-------GCGGAC--GUCG- -5'
6734 3' -60.4 NC_001875.2 + 17733 0.69 0.456777
Target:  5'- aACACCGUGGuGCuguGCGuCGCCaUGCcGCu -3'
miRNA:   3'- -UGUGGUACC-CGug-CGC-GCGG-ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 18140 0.72 0.337394
Target:  5'- aACGCCAcugugaguuacuggUGcGGCGCGCGCGacgccgccaCUGUGGCg -3'
miRNA:   3'- -UGUGGU--------------AC-CCGUGCGCGCg--------GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 18326 0.66 0.683291
Target:  5'- gGCACCGccacagugGcGGCgucGCGCGCGCCgcacCAGUa -3'
miRNA:   3'- -UGUGGUa-------C-CCG---UGCGCGCGGac--GUCG- -5'
6734 3' -60.4 NC_001875.2 + 18460 0.68 0.552346
Target:  5'- aACGCCGcGGcacaccuuuuuuGCGC-CGCGCC-GCAGCg -3'
miRNA:   3'- -UGUGGUaCC------------CGUGcGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 18653 0.67 0.592349
Target:  5'- uGCGgCGggucGGGCGCGgcUGCGUcgCUGCGGCg -3'
miRNA:   3'- -UGUgGUa---CCCGUGC--GCGCG--GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 18669 0.74 0.254206
Target:  5'- aAC-CCAUGguugccauaucaaacGGCGCGCGCGCCgGCGuGCa -3'
miRNA:   3'- -UGuGGUAC---------------CCGUGCGCGCGGaCGU-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.