miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 179 0.68 0.532641
Target:  5'- aACugCGUGGGgACGUGUGCgUUuaGGCa -3'
miRNA:   3'- -UGugGUACCCgUGCGCGCG-GAcgUCG- -5'
6734 3' -60.4 NC_001875.2 + 622 0.67 0.582289
Target:  5'- aGCGCguUGucaaGCGCGCccuGCGUUUGCAGCg -3'
miRNA:   3'- -UGUGguACc---CGUGCG---CGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 779 0.66 0.639894
Target:  5'- aACGCa--GGGCGCGCuugacaacGCGCUggugguuaauauagUGCGGCa -3'
miRNA:   3'- -UGUGguaCCCGUGCG--------CGCGG--------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 1083 0.67 0.612547
Target:  5'- cCAUCAUGGaCGCG-GC-CCUGCAGUc -3'
miRNA:   3'- uGUGGUACCcGUGCgCGcGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 1183 0.68 0.532641
Target:  5'- uGCGCCucGGGCcccgccACGCGCugcaagaacggGCCcGCAGCa -3'
miRNA:   3'- -UGUGGuaCCCG------UGCGCG-----------CGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 1887 0.67 0.572264
Target:  5'- gGCGgCGgcgGcGGCGCGaccgguguCGCGCCcGCAGCa -3'
miRNA:   3'- -UGUgGUa--C-CCGUGC--------GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 3698 0.66 0.653055
Target:  5'- cGCGCCAcGGcGCcggugACGUGCGCCaaaUGC-GCa -3'
miRNA:   3'- -UGUGGUaCC-CG-----UGCGCGCGG---ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 5935 0.66 0.642933
Target:  5'- aGCGCCGcgcaGGUggGCGCgGCCUcGCAGUa -3'
miRNA:   3'- -UGUGGUac--CCGugCGCG-CGGA-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 6025 0.68 0.532641
Target:  5'- cGCAUCGgcgaGGGCaaACGCGUGC-UGguGCa -3'
miRNA:   3'- -UGUGGUa---CCCG--UGCGCGCGgACguCG- -5'
6734 3' -60.4 NC_001875.2 + 6145 0.68 0.542464
Target:  5'- --cCCAUucGGCACGCGCuggGCCUGCccgucGGCg -3'
miRNA:   3'- uguGGUAc-CCGUGCGCG---CGGACG-----UCG- -5'
6734 3' -60.4 NC_001875.2 + 6967 0.66 0.653055
Target:  5'- uCGCCAc-GGCGCGC-UGCUUGaCAGCg -3'
miRNA:   3'- uGUGGUacCCGUGCGcGCGGAC-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 7014 0.67 0.609512
Target:  5'- cGCGCCAguugcUGGacguaagcgaggugGC-CGCGCGCUUGuCGGCc -3'
miRNA:   3'- -UGUGGU-----ACC--------------CGuGCGCGCGGAC-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 7076 0.72 0.339652
Target:  5'- gACGCCAccGGCcUGUGCGCagacaUGCAGCg -3'
miRNA:   3'- -UGUGGUacCCGuGCGCGCGg----ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 7430 0.69 0.494045
Target:  5'- aACGaCGaGGGCAacUGCGCGCCggcgauUGCGGCg -3'
miRNA:   3'- -UGUgGUaCCCGU--GCGCGCGG------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 7481 0.66 0.673243
Target:  5'- uGCGCCAUuggacgGGaGCACuuuGCGCaccacaaaacgGCCUGCAuGCa -3'
miRNA:   3'- -UGUGGUA------CC-CGUG---CGCG-----------CGGACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 8500 0.75 0.207629
Target:  5'- gGCGCCguccguGUGGGCGC-CGCGCaCUGCAacGCg -3'
miRNA:   3'- -UGUGG------UACCCGUGcGCGCG-GACGU--CG- -5'
6734 3' -60.4 NC_001875.2 + 8839 0.71 0.395426
Target:  5'- aACACCAacucauucagcUGGcGCACGUGuUGCCggucaaaguUGCAGCg -3'
miRNA:   3'- -UGUGGU-----------ACC-CGUGCGC-GCGG---------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 8994 0.67 0.616595
Target:  5'- uGCGCCAgcUgaaugaguugguguuGGGCGCGC-CGCCUGCc-- -3'
miRNA:   3'- -UGUGGU--A---------------CCCGUGCGcGCGGACGucg -5'
6734 3' -60.4 NC_001875.2 + 9851 0.67 0.57627
Target:  5'- cCACgAUGGGUgcacGCGCacaauuuuuucgacaGCGCCgcGCAGCu -3'
miRNA:   3'- uGUGgUACCCG----UGCG---------------CGCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 10085 0.68 0.513195
Target:  5'- aGCACCGcuagaauacuUGcGGCcCGCGCGCCaGUcGCg -3'
miRNA:   3'- -UGUGGU----------AC-CCGuGCGCGCGGaCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.