miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 11158 1.11 0.000607
Target:  5'- cACACCAUGGGCACGCGCGCCUGCAGCg -3'
miRNA:   3'- -UGUGGUACCCGUGCGCGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 54743 0.84 0.048555
Target:  5'- cGCGCCGUGGGCGCGC-CGCCgggcgaaGCGGCc -3'
miRNA:   3'- -UGUGGUACCCGUGCGcGCGGa------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 129696 0.84 0.053193
Target:  5'- cGCGCCGUGGcCGCGCGCagcucggccagcucgGCCUGCAGCu -3'
miRNA:   3'- -UGUGGUACCcGUGCGCG---------------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 38721 0.81 0.080567
Target:  5'- aGCAggAUGGGCACGcCGCGCCgacGCAGCa -3'
miRNA:   3'- -UGUggUACCCGUGC-GCGCGGa--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 128766 0.8 0.104733
Target:  5'- cACGCCGUGGGCGaccccgGCGCGCC-GCuGCg -3'
miRNA:   3'- -UGUGGUACCCGUg-----CGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 21668 0.79 0.110038
Target:  5'- cGCACCAcagccaaUGGGCGUGCGUguagcacaGCCUGCAGCu -3'
miRNA:   3'- -UGUGGU-------ACCCGUGCGCG--------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 40875 0.79 0.110324
Target:  5'- gGCGCCAuccUGGuGCACGCGCGCUUcGCGGa -3'
miRNA:   3'- -UGUGGU---ACC-CGUGCGCGCGGA-CGUCg -5'
6734 3' -60.4 NC_001875.2 + 85666 0.78 0.132166
Target:  5'- -aAUUGUGGGCGCGcCG-GCCUGCAGCg -3'
miRNA:   3'- ugUGGUACCCGUGC-GCgCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 90658 0.78 0.141611
Target:  5'- uACGCCgugcaaGUGGGC-CGCGCGCaguuugaacgcgcgCUGCAGCg -3'
miRNA:   3'- -UGUGG------UACCCGuGCGCGCG--------------GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 56524 0.78 0.142698
Target:  5'- aGCGCCGguuugacaacGGGCAUGuCGCGCCUGCGucGCa -3'
miRNA:   3'- -UGUGGUa---------CCCGUGC-GCGCGGACGU--CG- -5'
6734 3' -60.4 NC_001875.2 + 39314 0.77 0.15014
Target:  5'- cACACCGUGccggcGGCGUGCGCGCgCUGCAGg -3'
miRNA:   3'- -UGUGGUAC-----CCGUGCGCGCG-GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 40422 0.77 0.156347
Target:  5'- aACACCGagGGGCugACGCGCGCCaucgagaacguggGCAGCc -3'
miRNA:   3'- -UGUGGUa-CCCG--UGCGCGCGGa------------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 52111 0.76 0.17031
Target:  5'- cGCGCgCGUGcGGCACGuCGCGCCcaaaGUAGCg -3'
miRNA:   3'- -UGUG-GUAC-CCGUGC-GCGCGGa---CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 30955 0.76 0.183547
Target:  5'- uCGCCAUGGcGCccACGCGCGCgCUGCGccucGCg -3'
miRNA:   3'- uGUGGUACC-CG--UGCGCGCG-GACGU----CG- -5'
6734 3' -60.4 NC_001875.2 + 37214 0.76 0.183547
Target:  5'- cACAgCGUGGccGCGucCGCGCGCgUGCAGCg -3'
miRNA:   3'- -UGUgGUACC--CGU--GCGCGCGgACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 41785 0.76 0.185379
Target:  5'- gACGcCCAUGcuugugauuuccgccGGCACGCGCGCCggcgccGCGGCc -3'
miRNA:   3'- -UGU-GGUAC---------------CCGUGCGCGCGGa-----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 11032 0.76 0.187692
Target:  5'- cCAUgAUGGGCgaccaguuucaccACGCGCGCaaaCUGCAGCa -3'
miRNA:   3'- uGUGgUACCCG-------------UGCGCGCG---GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 42573 0.76 0.188157
Target:  5'- cGCGCCAggucGGcGCACGCGCGCgU-CAGCu -3'
miRNA:   3'- -UGUGGUa---CC-CGUGCGCGCGgAcGUCG- -5'
6734 3' -60.4 NC_001875.2 + 8500 0.75 0.207629
Target:  5'- gGCGCCguccguGUGGGCGC-CGCGCaCUGCAacGCg -3'
miRNA:   3'- -UGUGG------UACCCGUGcGCGCG-GACGU--CG- -5'
6734 3' -60.4 NC_001875.2 + 80615 0.75 0.228267
Target:  5'- uCACgGUGGGCgcgcggaACGCGCGCUcgacggGCGGCg -3'
miRNA:   3'- uGUGgUACCCG-------UGCGCGCGGa-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.