miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 54013 0.66 0.663161
Target:  5'- -gGCCuugGcGGCGCGCGCGUac-CGGCa -3'
miRNA:   3'- ugUGGua-C-CCGUGCGCGCGgacGUCG- -5'
6734 3' -60.4 NC_001875.2 + 107981 0.66 0.673243
Target:  5'- -aGCCAugaauuuuUGGGCggcuuuuaGCGCGUGCUUGguGg -3'
miRNA:   3'- ugUGGU--------ACCCG--------UGCGCGCGGACguCg -5'
6734 3' -60.4 NC_001875.2 + 56247 0.66 0.642933
Target:  5'- cACGCCG-----GCGCGCGgCUGCAGUa -3'
miRNA:   3'- -UGUGGUacccgUGCGCGCgGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 20630 0.66 0.642933
Target:  5'- cACGcCCGUGaGCaacaaaaaacgGCGCGCGCCgccCAGCg -3'
miRNA:   3'- -UGU-GGUACcCG-----------UGCGCGCGGac-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 117931 0.66 0.673243
Target:  5'- aGCugCAggccGGCGUGCGCGCC-GCcGCg -3'
miRNA:   3'- -UGugGUac--CCGUGCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 7481 0.66 0.673243
Target:  5'- uGCGCCAUuggacgGGaGCACuuuGCGCaccacaaaacgGCCUGCAuGCa -3'
miRNA:   3'- -UGUGGUA------CC-CGUG---CGCG-----------CGGACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 56456 0.66 0.642933
Target:  5'- -gGCCGguggcgGGGUcCGCGCGCgUGUuggucAGCg -3'
miRNA:   3'- ugUGGUa-----CCCGuGCGCGCGgACG-----UCG- -5'
6734 3' -60.4 NC_001875.2 + 98044 0.66 0.673243
Target:  5'- uGCGCCGacGGGCAaGUGCGCCUagaccacccCGGCc -3'
miRNA:   3'- -UGUGGUa-CCCGUgCGCGCGGAc--------GUCG- -5'
6734 3' -60.4 NC_001875.2 + 37859 0.66 0.629762
Target:  5'- cGCACCAcaaacauuacaaaacGGCGgGcCGCGCCaGCGGCu -3'
miRNA:   3'- -UGUGGUac-------------CCGUgC-GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 34654 0.66 0.653055
Target:  5'- cCGCCGUGGGCAaGUGCaCCUacacgauuggGCuGCg -3'
miRNA:   3'- uGUGGUACCCGUgCGCGcGGA----------CGuCG- -5'
6734 3' -60.4 NC_001875.2 + 92507 0.66 0.663161
Target:  5'- gGCGCaaaacGGGCGCucguGCGCGCCcgGC-GCg -3'
miRNA:   3'- -UGUGgua--CCCGUG----CGCGCGGa-CGuCG- -5'
6734 3' -60.4 NC_001875.2 + 34452 0.66 0.663161
Target:  5'- aACGCCAUGcGCGCGCaGCaaaaccugaGCUgGCAGUg -3'
miRNA:   3'- -UGUGGUACcCGUGCG-CG---------CGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 22832 0.66 0.663161
Target:  5'- gGCACCGUcGGCggcacgacguACGCGUccaGCCuggacaccgugcUGCAGCg -3'
miRNA:   3'- -UGUGGUAcCCG----------UGCGCG---CGG------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 87981 0.66 0.653055
Target:  5'- aACGCCcgc-GUACGCGaCGCCcgcGCAGCa -3'
miRNA:   3'- -UGUGGuaccCGUGCGC-GCGGa--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 76101 0.66 0.642933
Target:  5'- aACGuuAUGGGCGCGCcguaGCGCUccuuuucCAGCg -3'
miRNA:   3'- -UGUggUACCCGUGCG----CGCGGac-----GUCG- -5'
6734 3' -60.4 NC_001875.2 + 31974 0.66 0.640907
Target:  5'- -aACgCGUGuGGCGCGCGUacgGCCgguuugugagcgGCGGCg -3'
miRNA:   3'- ugUG-GUAC-CCGUGCGCG---CGGa-----------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 5935 0.66 0.642933
Target:  5'- aGCGCCGcgcaGGUggGCGCgGCCUcGCAGUa -3'
miRNA:   3'- -UGUGGUac--CCGugCGCG-CGGA-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 130849 0.66 0.683291
Target:  5'- -gGCCGUggcaaaagugGGGC-CGCGUGCCgUGCAuGUu -3'
miRNA:   3'- ugUGGUA----------CCCGuGCGCGCGG-ACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 37039 0.66 0.653055
Target:  5'- -gGCCGUGcacggcgcGuGCACGCGCGCggacGCGGCc -3'
miRNA:   3'- ugUGGUAC--------C-CGUGCGCGCGga--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 79120 0.66 0.663161
Target:  5'- gGCGuuGUcGGCgGCGgGCGCC-GCGGCg -3'
miRNA:   3'- -UGUggUAcCCG-UGCgCGCGGaCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.