miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 18140 0.72 0.337394
Target:  5'- aACGCCAcugugaguuacuggUGcGGCGCGCGCGacgccgccaCUGUGGCg -3'
miRNA:   3'- -UGUGGU--------------AC-CCGUGCGCGCg--------GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 51944 0.74 0.234393
Target:  5'- gGCGCUAcuuUGGGCGCGaCGUGCC-GCAcGCg -3'
miRNA:   3'- -UGUGGU---ACCCGUGC-GCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 18669 0.74 0.254206
Target:  5'- aAC-CCAUGguugccauaucaaacGGCGCGCGCGCCgGCGuGCa -3'
miRNA:   3'- -UGuGGUAC---------------CCGUGCGCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 49467 0.73 0.283175
Target:  5'- gGCGCCGUGGuucCGCGCGCGCCcgaguuUGCAc- -3'
miRNA:   3'- -UGUGGUACCc--GUGCGCGCGG------ACGUcg -5'
6734 3' -60.4 NC_001875.2 + 72558 0.73 0.296563
Target:  5'- gGCGCUgcGGGCGCGgGCGCgggcgCUGCGGg -3'
miRNA:   3'- -UGUGGuaCCCGUGCgCGCG-----GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 126289 0.72 0.310438
Target:  5'- uCGCCGUGacuGGCaccuuaACGCGCGCCUcaacgGCGGCc -3'
miRNA:   3'- uGUGGUAC---CCG------UGCGCGCGGA-----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 42919 0.72 0.320441
Target:  5'- cAUGCCGUGGGCGuCGCagucaaacguggcguGCGUCaGCAGCc -3'
miRNA:   3'- -UGUGGUACCCGU-GCG---------------CGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 50000 0.72 0.323343
Target:  5'- gGCGCUugucgcgguugGGGCGCGCGUggucGCCggGCGGCg -3'
miRNA:   3'- -UGUGGua---------CCCGUGCGCG----CGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 21238 0.72 0.337394
Target:  5'- aACACCAguUGgcgaagcugguccaGGCGCGCGCGCggcGCGGCu -3'
miRNA:   3'- -UGUGGU--AC--------------CCGUGCGCGCGga-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 32786 0.74 0.234393
Target:  5'- cGCGgCGUGGGCggGCGcCGCGCCgGCAaGCu -3'
miRNA:   3'- -UGUgGUACCCG--UGC-GCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 80615 0.75 0.228267
Target:  5'- uCACgGUGGGCgcgcggaACGCGCGCUcgacggGCGGCg -3'
miRNA:   3'- uGUGgUACCCG-------UGCGCGCGGa-----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 8500 0.75 0.207629
Target:  5'- gGCGCCguccguGUGGGCGC-CGCGCaCUGCAacGCg -3'
miRNA:   3'- -UGUGG------UACCCGUGcGCGCG-GACGU--CG- -5'
6734 3' -60.4 NC_001875.2 + 40875 0.79 0.110324
Target:  5'- gGCGCCAuccUGGuGCACGCGCGCUUcGCGGa -3'
miRNA:   3'- -UGUGGU---ACC-CGUGCGCGCGGA-CGUCg -5'
6734 3' -60.4 NC_001875.2 + 85666 0.78 0.132166
Target:  5'- -aAUUGUGGGCGCGcCG-GCCUGCAGCg -3'
miRNA:   3'- ugUGGUACCCGUGC-GCgCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 39314 0.77 0.15014
Target:  5'- cACACCGUGccggcGGCGUGCGCGCgCUGCAGg -3'
miRNA:   3'- -UGUGGUAC-----CCGUGCGCGCG-GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 40422 0.77 0.156347
Target:  5'- aACACCGagGGGCugACGCGCGCCaucgagaacguggGCAGCc -3'
miRNA:   3'- -UGUGGUa-CCCG--UGCGCGCGGa------------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 30955 0.76 0.183547
Target:  5'- uCGCCAUGGcGCccACGCGCGCgCUGCGccucGCg -3'
miRNA:   3'- uGUGGUACC-CG--UGCGCGCG-GACGU----CG- -5'
6734 3' -60.4 NC_001875.2 + 41785 0.76 0.185379
Target:  5'- gACGcCCAUGcuugugauuuccgccGGCACGCGCGCCggcgccGCGGCc -3'
miRNA:   3'- -UGU-GGUAC---------------CCGUGCGCGCGGa-----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 11032 0.76 0.187692
Target:  5'- cCAUgAUGGGCgaccaguuucaccACGCGCGCaaaCUGCAGCa -3'
miRNA:   3'- uGUGgUACCCG-------------UGCGCGCG---GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 42573 0.76 0.188157
Target:  5'- cGCGCCAggucGGcGCACGCGCGCgU-CAGCu -3'
miRNA:   3'- -UGUGGUa---CC-CGUGCGCGCGgAcGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.